Page 56 - Read Online
P. 56
Kamal et al. J Transl Genet Genom 2024;8:162-85 https://dx.doi.org/10.20517/jtgg.2023.55 Page 180
2. Shi T, Gao G, Cao Y. Long noncoding RNAs as novel biomarkers have a promising future in cancer diagnostics. Dis Markers
2016;2016:9085195. DOI PubMed PMC
3. Jiang X, Yan Y, Hu M, et al. Increased level of H19 long noncoding RNA promotes invasion, angiogenesis, and stemness of
glioblastoma cells. J Neurosurg 2016;124:129-36. DOI
4. Ma L, Bajic VB, Zhang Z. On the classification of long non-coding RNAs. RNA Biol 2013;10:925-33. DOI PubMed PMC
5. Zhan L, Li J, Wei B. Long non-coding RNAs in ovarian cancer. J Exp Clin Cancer Res 2018;37:120. DOI PubMed PMC
6. Xi J, Sun Q, Ma L, Kang J. Long non-coding RNAs in glioma progression. Cancer Lett 2018;419:203-9. DOI PubMed
7. Yang M, Zhai Z, Guo S, Li X, Zhu Y, Wang Y. Long non-coding RNA FLJ33360 participates in ovarian cancer progression by
sponging miR-30b-3p. Onco Targets Ther 2019;12:4469-80. DOI PubMed PMC
8. Shao M, Liu W, Wang Y. Differentially expressed LncRNAs as potential prognostic biomarkers for glioblastoma. Cancer Genet
2018;226-7:23-9. DOI PubMed
9. Kiang KMY, Leung GKK. Clinical significance of CRNDE transcript variants in glioblastoma multiforme. Noncoding RNA Res
2017;2:119-21. DOI PubMed PMC
10. Ma Y, Luo T, Dong D, Wu X, Wang Y. Characterization of long non-coding RNAs to reveal potential prognostic biomarkers in
hepatocellular carcinoma. Gene 2018;663:148-56. DOI PubMed
11. Zeng T, Li L, Zhou Y, Gao L. Exploring long noncoding RNAs in glioblastoma: regulatory mechanisms and clinical potentials. Int J
Genomics 2018;2018:2895958. DOI PubMed PMC
12. Balas MM, Johnson AM. Exploring the mechanisms behind long noncoding RNAs and cancer. Noncoding RNA Res 2018;3:108-17.
DOI PubMed PMC
13. Cabili MN, Dunagin MC, McClanahan PD, et al. Localization and abundance analysis of human lncRNAs at single-cell and single-
molecule resolution. Genome Biol 2015;16:20. DOI PubMed PMC
14. Duran R, Wei H, Kim DH, Wu JQ. Invited review: long non-coding RNAs: important regulators in the development, function and
disorders of the central nervous system. Neuropathol Appl Neurobiol 2019;45:538-56. DOI PubMed PMC
15. Bridges MC, Daulagala AC, Kourtidis A. LNCcation: lncRNA localization and function. J Cell Biol 2021;220:e202009045. DOI
PubMed PMC
16. Clark MB, Johnston RL, Inostroza-Ponta M, et al. Genome-wide analysis of long noncoding RNA stability. Genome Res
2012;22:885-98. DOI PubMed PMC
17. Bresson SM, Hunter OV, Hunter AC, Conrad NK. Canonical Poly(A) polymerase activity promotes the decay of a wide variety of
mammalian nuclear RNAs. PLoS Genet 2015;11:e1005610. DOI PubMed PMC
18. Du Z, Sun T, Hacisuleyman E, et al. Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in
prostate cancer. Nat Commun 2016;7:10982. DOI PubMed PMC
19. Grelet S, Link LA, Howley B, et al. A regulated PNUTS mRNA to lncRNA splice switch mediates EMT and tumour progression. Nat
Cell Biol 2017;19:1105-15. DOI PubMed PMC
20. Lin A, Li C, Xing Z, et al. The LINK-A lncRNA activates normoxic HIF1α signalling in triple-negative breast cancer. Nat Cell Biol
2016;18:213-24. DOI PubMed PMC
21. Gong C, Maquat LE. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. Nature
2011;470:284-8. DOI PubMed PMC
22. Rackham O, Shearwood AM, Mercer TR, Davies SM, Mattick JS, Filipovska A. Long noncoding RNAs are generated from the
mitochondrial genome and regulated by nuclear-encoded proteins. RNA 2011;17:2085-93. DOI PubMed PMC
23. Noh JH, Kim KM, Abdelmohsen K, et al. HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the
lncRNA RMRP. Genes Dev 2016;30:1224-39. DOI PubMed PMC
24. Kaewsapsak P, Shechner DM, Mallard W, Rinn JL, Ting AY. Live-cell mapping of organelle-associated RNAs via proximity
biotinylation combined with protein-RNA crosslinking. Elife 2017;6:e29224. DOI PubMed PMC
25. Fazal FM, Han S, Parker KR, et al. Atlas of subcellular RNA localization revealed by APEX-Seq. Cell 2019;178:473-90.e26. DOI
PubMed PMC
26. Jiang C, Li Y, Zhao Z, et al. Identifying and functionally characterizing tissue-specific and ubiquitously expressed human lncRNAs.
Oncotarget 2016;7:7120-33. DOI PubMed PMC
27. Derrien T, Johnson R, Bussotti G, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure,
evolution, and expression. Genome Res 2012;22:1775-89. DOI PubMed PMC
28. Washietl S, Kellis M, Garber M. Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals.
Genome Res 2014;24:616-28. DOI PubMed PMC
29. Wu Z, Liu X, Liu L, et al. Regulation of lncRNA expression. Cell Mol Biol Lett 2014;19:561-75. DOI PubMed PMC
30. Macrae TA, Fothergill-Robinson J, Ramalho-Santos M. Regulation, functions and transmission of bivalent chromatin during
mammalian development. Nat Rev Mol Cell Biol 2023;24:6-26. DOI PubMed
31. Bernstein BE, Mikkelsen TS, Xie X, et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
Cell 2006;125:315-26. DOI
32. Beck D, Ben Maamar M, Skinner MK. Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and
WGBS) comparisons. Epigenetics 2022;17:518-30. DOI PubMed PMC
33. Elango N, Yi SV. DNA methylation and structural and functional bimodality of vertebrate promoters. Mol Biol Evol 2008;25:1602-8.
DOI PubMed

