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Page 8 of 15        Pintos-Morell et al. Rare Dis Orphan Drugs J 2024;3:12  https://dx.doi.org/10.20517/rdodj.2023.52

               Table 2. IMDs without a sufficiently robust biochemical marker where NGS may be used as a first-tier test
                Condition                    Gene/s              Treatment
                N-acetylglutamate synthase, NAGS deficiency NAGS  N-carbamylglutamate
                Carbamoyl-phosphate synthetase I, CPS1   CPS1    Protein restriction, citrulline, sodium benzoate, phenylbutyrate,
                deficiency                                       liver transplantation, N-carbamylglutamate
                Ornithine transcarbamylase, OTC deficiency  OTC  Protein restriction, citrulline, sodium benzoate, phenylbutyrate,
                                                                 glycerol phenylbutyrate, liver transplantation
                Carbonic anhydrase VA, CAVA deficiency  CA5A     N-carbamylglutamate, limit protein with illness, ensure caloric
                                                                 intake
                Delta-1-pyrroline-5-carboxylate   ALDH4A1        Pyridoxine
                dehydrogenase deficiency, Hyperprolinemia
                type II
                Mitochondrial Ornithine transporter 1   SLC25A15  Low-protein diet, citrulline, arginine
                (ORNT1) deficiency, HHH syndrome
                Mitochondrial aspartate glutamate carrier 2,   SLC25A13  MCT milk and lactose-free milk, lipid-soluble vitamins, and
                Citrin deficiency                                ursodeoxycholic acid. Liver transplantation
                Lysinuric protein intolerance (LPI)  SLC7A7      Citrulline
                Hyperinsulinism-hyperammonemia syndrome  GLUD1   Diazoxide, somatostatin analogs, nifedipine, glucagon, IGF-1,
                                                                 glucocorticoids, growth hormone, pancreatic resection, mTOR
                                                                 inhibitors, GLP-1 receptor antagonists, sirolimus
                Thiamine transporter 1       SLC19A2             Thiamine (vitamin B1), insulin
                Biotin-thiamine responsive basal ganglia   SLC19A3  Thiamine (vitamin B1) and biotin
                disease (thiamine transporter 2)
                Thiamine metabolism dysfunction syndrome 5 TPK1  Thiamine (vitamin B1)
                Transcobalamin II deficiency  TCN2               Hydroxocobalamin
                Brown-Vialetto-van Laere syndrome 1, 2   SLC52A3   Riboflavin (vitamin B2)
                (Riboflavin transporter deficiency)  SLC52A2
                Manganese transporters       SLC30A10, SLC39A14  Manganese chelation therapy with EDTA-CaNa2
                Magnesium transporters       SLC41A1, *ABCC6,    *Etidronate, anti-hypertensive, calcitriol and oral phosphate
                                             **ABCG5/ABCG8       supplements
                                                                 **Diet low in shellfish sterols and plant sterols, ezetimibe,
                                                                 cholestyramine
                Epithelial magnesium transporter deficiency,   TRPM6  Magnesium
                Hypomagnesemia with secondary
                hypocalcemia
                Hypomagnesemia-hypercalciuria-  CLDN16, CLDN19   Magnesium, thiazide, renal transplant
                nephrocalcinosis
                Bartter syndrome type 1, 2   SLC12A1, KCNJ1      Sodium chloride, potassium chloride, indomethacin
                Calcium transporters and receptors:   SLC25A24, SLC25A13, SLC8A1,  Thiazide diuretics, calcium, calcitriol*
                Autosomal dominant hypocalcemia*   SLC8B1, SLC30A10, SLC24A2,   Bisphosphonate, parathyroidectomy, cinacalcet**
                Neonatal hyperparathyroidism and familial   CASR
                hypocalciuric hypercalcemia type I**
                Hyperoxaluria type 1 (hepato-renal), type II,   AGXT, GRHPR, HOGA1  Lumasiran, pyridoxine, drinking large volumes, alkalinization of
                type III                                         urine, pyrophosphate-containing solutions, liver-kidney
                                                                 transplant
                Congenital Defects of Glycosylation (CDG)   ALG1-CDG, MPI-CDG, PMM2-  Mannose, D-galactose, fucose
                                             CDG, PGM1-CDG
                mtDNA disorders: Thymidine kinase   TK2          Deoxycytidine (dC) and deoxythymidine (dT)
                deficiency
                Molybdenum cofactor deficiency  MOCS1, MOCS2, GEPH  Cyclic pyranopterin monophosphate (MOCS1)
                Pyrimidine disorders: orotic aciduria, early   UMPS, CAD  Uridine, triacetyluridine
                infantile epileptic encephalopathy-50
                Wilson disease               ATP7B               Zinc, D-penicillamine, trientine
                Menkes disease               ATP7A               Subcutaneous injections of copper histidine or copper chloride
                Cerebral creatine deficiency syndrome 2  GAMT    Creatine monohydrate and ornithine supplementation. Arginine
                                                                 restriction
                Cerebral creatine deficiency syndrome 3  GATM    Creatine monohydrate
                RPE65 associated Leber congenital amaurosis,  RPE65  Gene therapy (Luxturna)
                early-onset severe retinal dystrophy
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