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Cao                                                                                                                                                                                                                      Cancer Evo-Dev

               J,  Han  X,  Zhang  H,  Cao  G.  HLA-DP  polymorphisms  affect  the   2012;481:306-13.
               outcomes  of  chronic  hepatitis  B  virus  infections,  possibly  through   81.  Stratton  MR.  Exploring  the  genomes  of  cancer  cells:  progress  and
               interacting with viral mutations. J Virol 2013;87:12176-86.   promise. Science 2011;331:1553-8.
           62.  Ji X, Zhang Q, Li B, Du Y, Yin J, Liu W, Zhang H, Cao G. Impacts   82.  Xu X, Chang W, Yuan J, Han X, Tan X, Ding Y, Luo Y, Cai H, Liu
               of  human  leukocyte  antigen  DQ  genetic  polymorphisms  and  their   Y, Gao X, Liu Q, Yu Y, Du Y, Wang H, Ma L, Wang J, Chen K, Ding
               interactions  with  hepatitis  B  virus  mutations  on  the  risks  of  viral   Y, Fu C, Cao G. Periostin expression in intra-tumoral stromal cells
               persistence, liver cirrhosis, and hepatocellular carcinoma. Infect Genet   is prognostic and predictive for colorectal carcinoma via creating a
               Evol 2014;28:201-9.                               cancer-supportive niche. Oncotarget 2016;7:798-813.
           63.  Xie J, Zhang Y, Zhang Q, Han Y, Yin J, Pu R, Shen Q, Lu W, Du   83.  Yong KJ, Gao C, Lim JS, Yan B, Yang H, Dimitrov T, Kawasaki
               Y, Zhao J, Han X, Zhang H, Cao G. Interaction of signal transducer   A, Ong CW, Wong KF, Lee S, Ravikumar S, Srivastava S, Tian X,
               and activator of transcription 3 polymorphisms with hepatitis B virus   Poon RT, Fan ST, Luk JM, Dan YY, Salto-Tellez M, Chai L, Tenen
               mutations in hepatocellular carcinoma. Hepatology 2013;57:2369-77.  DG. Oncofetal gene SALL4 in aggressive hepatocellular carcinoma.
           64.  Zhang Q, Ji XW, Hou XM, Lu FM, Du Y, Yin JH, Sun XY, Deng Y,   N Engl J Med 2013;368:2266-76.
               Zhao J, Han X, Yang GS, Zhang HW, Chen XM, Shen HB, Wang   84.  Zeng SS, Yamashita T, Kondo M, Nio K, Hayashi T, Hara Y, Nomura
               HY,  Cao  GW.  Effect  of  functional  nuclear  factor-kappaB  genetic   Y, Yoshida M, Hayashi T, Oishi N, Ikeda H, Honda M, Kaneko S. The
               polymorphisms on hepatitis B virus persistence and their interactions   transcription  factor  SALL4  regulates  stemness  of  EpCAM-positive
               with  viral  mutations  on  the  risk  of  hepatocellular  carcinoma.  Ann   hepatocellular carcinoma. J Hepatol 2014;60:127-34.
               Oncol 2014;25:2413-9.                          85.  Moeini A, Sia D, Zhang Z, Camprecios G, Stueck A, Dong H, Montal
           65.  He Y, Zhang H, Yin J, Xie J, Tan X, Liu S, Zhang Q, Li C, Zhao   R,  Torrens  L,  Martinez-Quetglas  I,  Fiel  MI,  Hao  K,  Villanueva
               J,  Wang  H,  Cao  G.  IkappaBalpha  gene  promoter  polymorphisms   A,  Thung  SN,  Schwartz  ME,  Llovet  JM.  Mixed  hepatocellular
               are  associated  with  hepatocarcinogenesis  in  patients  infected  with   cholangiocarcinomatumors:  cholangiolocellular  carcinoma  is a
               hepatitis B virus genotype C. Carcinogenesis 2009;30:1916-22.  distinct molecular entity. J Hepatol 2017;66:952-61.
           66.  Wang S, Zhang J, Jiao W, Li J, Xun X, Sun Y, Guo X, Huan P, Dong   86.  Fan H, Cui Z, Zhang H, Mani SK, Diab A, Lefrancois L, Fares N,
               B, Zhang L, Hu X, Sun X, Wang J, Zhao C, Wang Y, Wang D, Huang   Merle P, Andrisani O. DNA demethylation induces SALL4 gene re-
               X, Wang R, Lv J, Li Y, Zhang Z, Liu B, Lu W, Hui Y, Liang J, Zhou   expression in subgroups of hepatocellular carcinoma associated with
               Z, Hou R, Li X, Liu Y, Li H, Ning X, Lin Y, Zhao L, Xing Q, Dou   Hepatitis B or C virus infection. Oncogene 2017;36:2435-45.
               J, Li Y, Mao J, Guo H, Dou H, Li T, Mu C, Jiang W, Fu Q, Fu X,   87.  Lee  JS,  Heo  J,  Libbrecht  L,  Chu  IS,  Kaposi-Novak  P,  Calvisi
               Miao Y, Liu J, Yu Q, Li R, Liao H, Li X, Kong Y, Jiang Z, Chourrout   DF,  Mikaelyan  A,  Roberts  LR,  Demetris  AJ,  Sun  Z,  Nevens  F,
               D, Li R, Bao Z. Scallop genome provides insights into evolution of   Roskams T, Thorgeirsson SS. A novel prognostic subtype of human
               bilaterian karyotype and development. Nat Ecol Evol 2017;1:120.  hepatocellular carcinoma derived from hepatic progenitor cells. Nat
           67.  Deschamps  J,  Duboule  D.  Embryonic  timing,  axial  stem  cells,   Med 2006;12:410-6.
               chromatin dynamics, and the Hox clock. Genes Dev 2017;31:1406-16.  88.  Carro  MS,  Lim  WK,  Alvarez  MJ,  Bollo  RJ,  Zhao  X,  Snyder  EY,
           68.  Hinaux H, Devos L, Blin M, Elipot Y, Bibliowicz J, Alié A, Rétaux S.   Sulman EP, Anne SL, Doetsch F, Colman H, Lasorella A, Aldape K,
               Sensory evolution in blind cavefish is driven by early embryonic events   Califano A, Iavarone A. The transcriptional network for mesenchymal
               during gastrulation and neurulation. Development 2016;143:4521-32.  transformation of brain tumours. Nature 2010;463:318-25.
           69.  Lettice LA, Devenney P, De Angelis C, Hill RE. The conserved Sonic   89.  Yu J, Yu J, Rhodes DR, Tomlins SA, Cao X, Chen G, Mehra R, Wang
               Hedgehog limb enhancer consists of discrete functional elements that   X, Ghosh D, Shah RB, Varambally S, Pienta KJ, Chinnaiyan AM. A
               regulate precise spatial expression. Cell Rep 2017;20:1396-408.  polycomb repression signature in metastatic prostate cancer predicts
           70.  Rodrigues  AR,  Yakushiji-Kaminatsui  N,  Atsuta  Y,  Andrey  G,   cancer outcome. Cancer Res 2007;67:10657-63.
               Schorderet  P,  Duboule  D,  Tabin  CJ.  Integration  of  Shh  and   90.  DiMeo  TA,  Anderson  K,  Phadke  P,  Fan  C,  Perou  CM,  Naber  S,
               Fgfsignaling  in  controlling  Hox  gene  expression  in  cultured  limb   Kuperwasser C. A novel lung metastasis signature links Wnt signaling
               cells. Proc Natl Acad Sci U S A 2017;114:3139-44.  with cancer cell self-renewal and epithelial-mesenchymal transition in
           71.  Tarazona OA, Slota LA, Lopez DH, Zhang G, Cohn MJ. The genetic   basal-like breast cancer. Cancer Res 2009;69:5364-73.
               program  for  cartilage  development  has  deep  homology  within   91.  Ben-Porath I, Thomson MW, Carey VJ, Ge R, Bell GW, Regev A,
               Bilateria. Nature 2016;533:86-9.                  Weinberg RA. An embryonic stem cell-like gene expression signature
           72.  Zhong C, Zhou YK, Yang SS, Zhao JF, Zhu XL, Chen HH, Chen   in poorly differentiated  aggressive human tumors.  Nat Genet
               PC, Huang LQ, Huang X. Developmental expression of the N-myc   2008;40:499-507.
               downstream regulated gene (Ndrg) family during Xenopustropicalis   92.  Chen  H,  He  X.  The  convergent  cancer  evolution  toward  a  single
               embryogenesis. Int J Dev Biol 2015;59:511-7.      cellular destination. Mol Biol Evol 2016;33:4-12.
           73.  Roush W, Pennisi E. Growing pains: evo-devo researchers straddle   93.  Qin Y, Tang B, Hu CJ, Xiao YF, Xie R, Yong X, Wu YY, Dong H,
               cultures. Science 1997;277:38-9.                  Yang SM. An hTERT/ZEB1 complex directly regulates E-cadherin
           74.  Akam M. The Yin and Yang of Evo/Devo. Cell 1998;92:153-5.  to promote epithelial-to-mesenchymal transition (EMT) in colorectal
           75.  Raff RA. Evo-devo: the evolution of a new discipline. Nat Rev Genet   cancer. Oncotarget 2016;7:351-61.
               2000;1:74-9.                                   94.  Chen  J,  Chan  AW,  To  KF,  Chen  W,  Zhang  Z,  Ren  J,  Song  C,
           76.  De  Robertis  EM.  Evo-devo:  variations  on  ancestral  themes.  Cell   Cheung YS, Lai PB, Cheng SH, Ng MH, Huang A, Ko BC. SIRT2
               2008;132:185-95.                                  overexpression  in  hepatocellular  carcinoma  mediates  epithelial  to
           77.  Carroll  SB.  Evo-devo  and  an  expanding  evolutionary  synthesis:  a   mesenchymal  transition  by  protein  kinase  B/glycogen  synthase
               genetic theory of morphological evolution. Cell 2008;134:25-36.  kinase-3β/β-catenin signaling. Hepatology 2013;57:2287-98.
           78.  Nowell PC. The clonal evolution of tumor cell populations. Science   95.  Chen  T,  You  Y,  Jiang  H,  Wang  ZZ.  Epithelial-mesenchymal
               1976;194:23-8.                                    transition (EMT): a biological process in the development, stem cell
           79.  Merlo LM, Pepper JW, Reid BJ, Maley CC. Cancer as an evolutionary   differentiation, and tumorigenesis. J Cell Physiol 2017;232:3261-72.
               and ecological process. Nat Rev Cancer 2006;6:924-35.  96.  Alexandrov  LB,  Nik-Zainal  S,  Wedge  DC,  Campbell  PJ,  Stratton
           80.  Greaves M,  Maley CC. Clonal evolution in cancer.  Nature   MR. Signatures  of mutational  processes in  human  cancer.  Nature

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