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Page 20 of 20              Puhlmann et al. Microbiome Res Rep 2024;3:28  https://dx.doi.org/10.20517/mrr.2024.04

               65.      O’Connell Motherway M, Houston A, O’Callaghan G, et al. A Bifidobacterial pilus-associated protein promotes colonic epithelial
                   proliferation. Mol Microbiol 2019;111:287-301.  DOI  PubMed
               66.      Gutierrez A, Pucket B, Engevik MA. Bifidobacterium and the intestinal mucus layer. Microbiome Res Rep 2023;2:36.  DOI  PubMed
                   PMC
               67.      Isenring J, Bircher L, Geirnaert A, Lacroix C. In vitro human gut microbiota fermentation models: opportunities, challenges, and
                   pitfalls. Microbiome Res Rep 2023;2:2.  DOI  PubMed  PMC
               68.      Shkoporov AN, O’Regan O, Smith L, et al. Dynamic nature of viral and bacterial communities in human faeces. iScience
                   2024;27:108778.  DOI  PubMed  PMC
               69.      Poppe J, Vieira-Silva S, Raes J, Verbeke K, Falony G. Systematic optimization of fermentation conditions for in vitro fermentations
                   with fecal inocula. Front Microbiol 2023;14:1198903.  DOI  PubMed  PMC
               70.      Gao Q, Li K, Zhong R, et al. Supplementing glycerol to inoculum induces changes in pH, SCFA profiles, and microbiota composition
                   in in-vitro batch fermentation. Fermentation 2022;8:18.  DOI
               71.      Ács N, Holohan R, Dunne LJ, et al. Comparing in vitro faecal fermentation methods as surrogates for phage therapy application.
                   Viruses 2022;14:2632.  DOI  PubMed  PMC
               72.      Gnanasekaran T, Assis Geraldo J, Ahrenkiel DW, et al. Ecological adaptation and succession of human fecal microbial communities in
                   an automated in vitro fermentation system. mSystems 2021;6:e0023221.  DOI  PubMed  PMC
               73.      Long W, Xue Z, Zhang Q, et al. Differential responses of gut microbiota to the same prebiotic formula in oligotrophic and eutrophic
                   batch fermentation systems. Sci Rep 2015;5:13469.  DOI  PubMed  PMC
               74.      Pirkola L, Dicksved J, Loponen J, Marklinder I, Andersson R. Fecal microbiota composition affects in vitro fermentation of rye, oat,
                   and wheat bread. Sci Rep 2023;13:99.  DOI  PubMed  PMC
               75.      Louis P, Duncan SH, Sheridan PO, Walker AW, Flint HJ. Microbial lactate utilisation and the stability of the gut microbiome. Gut
                   Microb 2022;3:e3.  DOI
               76.      Louis P, Flint HJ. Formation of propionate and butyrate by the human colonic microbiota. Environ Microbiol 2017;19:29-41.  DOI
                   PubMed
               77.      Engels C, Ruscheweyh HJ, Beerenwinkel N, Lacroix C, Schwab C. The common gut microbe Eubacterium hallii also contributes to
                   intestinal propionate formation. Front Microbiol 2016;7:713.  DOI  PubMed  PMC
               78.      Shetty SA, Kuipers B, Atashgahi S, Aalvink S, Smidt H, de Vos WM. Inter-species metabolic interactions in an in-vitro minimal
                   human gut microbiome of core bacteria. NPJ Biofilms Microbiomes 2022;8:21.  DOI  PubMed  PMC
               79.      Shetty SA, Boeren S, Bui TPN, Smidt H, de Vos WM. Unravelling lactate-acetate and sugar conversion into butyrate by intestinal
                   Anaerobutyricum and Anaerostipes species by comparative proteogenomics. Environ Microbiol 2020;22:4863-75.  DOI  PubMed
                   PMC
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