Page 91 - Read Online
P. 91

Page 14 of 15                 Spus et al. Microbiome Res Rep 2023;2:33  https://dx.doi.org/10.20517/mrr.2023.20

               Financial support and sponsorship
               The project was funded by TI Food and Nutrition (TIFN), Wageningen, the Netherlands (grant number
               FF001), a public-private partnership on precompetitive research in food and nutrition. The public partners
               are responsible for the study design, data collection and analysis, decision to publish, and preparation of the
               manuscript. The private partners contributed to the project through regular discussion.

               Conflicts of interest
               All authors declared that there are no conflicts of interest.


               Ethical approval and consent to participate
               Not applicable.


               Consent for publication
               Not applicable.


               Copyright
               © The Author(s) 2023.


               REFERENCES
               1.       Acinas SG, Klepac-Ceraj V, Hunt DE, et al. Fine-scale phylogenetic architecture of a complex bacterial community. Nature
                   2004;430:551-4.  DOI  PubMed
               2.       Bohannan BJM, Lenski RE. Linking genetic change to community evolution: insights from studies of bacteria and bacteriophage. Ecol
                   Lett 2000;3:362-77.  DOI
               3.       Erkus O, de Jager VC, Spus M, et al. Multifactorial diversity sustains microbial community stability. ISME J 2013;7:2126-36.  DOI
                   PubMed  PMC
               4.       Smid EJ, Erkus O, Spus M, Wolkers-Rooijackers JCM, Alexeeva S, Kleerebezem M. Functional implications of the microbial
                   community structure of undefined mesophilic starter cultures. Microb Cell Fact 2014;13:1-9.  DOI  PubMed  PMC
               5.       Spus M, Li M, Alexeeva S, et al. Strain diversity and phage resistance in complex dairy starter cultures. J Dairy Sci 2015;98:5173-82.
                   DOI  PubMed
               6.      Suttle CA. Marine viruses - major players in the global ecosystem. Nat Rev Microbio 2007;5:801-12.  DOI  PubMed
               7.      Fuhrman JA. Marine viruses and their biogeochemical and ecological effects. Nature 1999;399:541-8.  DOI  PubMed
               8.       Thingstad TF. Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial
                   viruses in aquatic systems. Limnol Oceanogr 2000;45:1320-8.  DOI
               9.       Rodriguez-valera F, Martín-cuadrado A, Rodriguez-brito B, et al. Explaining microbial population genomics through phage predation.
                   Nat Prec 2009:1.  DOI
               10.      Scheffer M, Rinaldi S, Gragnani A, Mur LR, van Nes EH. On the dominance of filamentous cyanobacteria in shallow, turbid lakes.
                   Ecology 1997;78:272-82.  DOI
               11.      Knowlton N. Thresholds and multiple stable states in coral reef community dynamics. Am Zool 1992;32:674-82.  DOI
               12.      Hare SR, Mantua NJ. Empirical evidence for North Pacific regime shifts in 1977 and 1989. Prog Oceanogr 2000;47:103-45.  DOI
               13.      Scheffer M, Carpenter S, Foley JA, Folke C, Walker B. Catastrophic shifts in ecosystems. Nature 2001;413:591-6.  DOI  PubMed
               14.      Samson JE, Moineau S. Bacteriophages in food fermentations: new frontiers in a continuous arms race. Annu Rev Food Sci Technol
                   2013;4:347-68.  DOI  PubMed
               15.      Grath S, Fitzgerald GF, van Sinderen D. Bacteriophages in dairy products: pros and cons. Biotechnol J 2007;2:450-5.  DOI  PubMed
               16.      Stadhouders J. The control of cheese starter activity. Neth milk dairy J 1986;40:390. Available from: http://pascal-francis.inist.fr/vibad/
                   index.php?action=getRecordDetail&idt=7935757. [Last accessed on 28 Aug 2023].
               17.      Pal C, Maciá MD, Oliver A, Schachar I, Buckling A. Coevolution with viruses drives the evolution of bacterial mutation rates. Nature
                   2007;450:1079-81.  DOI  PubMed
               18.      Mizoguchi K, Morita M, Fischer CR, Yoichi M, Tanji Y, Unno H. Coevolution of bacteriophage PP01 and Escherichia coli O157:H7
                   in continuous culture. Appl Environ Microbiol 2003;69:170-6.  DOI  PubMed  PMC
               19.      Chao L, Levin BR, Stewart FM. A complex community in a simple habitat: an experimental study with bacteria and phage. Ecology
                   1977;58:369-78.  DOI
               20.      Kütahya OE, Starrenburg MJC, Rademaker JLW, et al. High-resolution amplified fragment length polymorphism typing of
                   Lactococcus lactis strains enables identification of genetic markers for subspecies-related phenotypes. Appl Environ Microbiol
                   2011;77:5192-8.  DOI  PubMed  PMC
               21.      Smid EJ, Poolman B, Konings WN. Casein utilization by lactococci. Appl Environ Microbiol 1991;57:2447-52.  DOI  PubMed  PMC
   86   87   88   89   90   91   92   93   94   95   96