Page 72 - Read Online
P. 72

Martin et al. Microbiome Res Rep 2023;2:17  https://dx.doi.org/10.20517/mrr.2023.10  Page 9 of 13

               Conflicts of interest
               All authors declared that there are no conflicts of interest.


               Ethical approval and consent to participate
               Not applicable.


               Consent for publication
               Not applicable.


               Copyright
               © The Author(s) 2023.


               REFERENCES
               1.       Qin J, Li R, Raes J, et al; MetaHIT Consortium. A human gut microbial gene catalogue established by metagenomic sequencing.
                    Nature 2010;464:59-65.  DOI
               2.       Sender R, Fuchs S, Milo R. Are we really vastly outnumbered? Cell 2016;164:337-40.  DOI  PubMed
               3.       Buford TW. (Dis)Trust your gut: the gut microbiome in age-related inflammation, health, and disease. Microbiome 2017;5:80.  DOI
                    PubMed  PMC
               4.       Arumugam M, Raes J, Pelletier E, et al. Enterotypes of the human gut microbiome. Nature 2011;473:174-80.  DOI  PubMed  PMC
               5.       Magne F, Gotteland M, Gauthier L, et al. The firmicutes/Bacteroidetes ratio: a relevant marker of gut dysbiosis in obese patients?
                    Nutrients 2020;12:1474.  DOI  PubMed  PMC
               6.       Oren A, Garrity GM. Valid publication of the names of forty-two phyla of prokaryotes. Int J Syst Evol Microbiol 2021:71.  DOI
                    PubMed
               7.       Rinninella E, Raoul P, Cintoni M, et al. What is the healthy gut microbiota composition? Microorganisms 2019;7:14.  DOI  PubMed
                    PMC
               8.       Thursby E, Juge N. Introduction to the human gut microbiota. Biochem J 2017;474:1823-36.  DOI  PubMed  PMC
               9.       Enav H, Bäckhed F, Ley RE. The developing infant gut microbiome: a strain-level view. Cell Host Microbe 2022;30:627-38.  DOI
                    PubMed
               10.       Forster SC, Kumar N, Anonye BO, et al. A human gut bacterial genome and culture collection for improved metagenomic analyses.
                    Nat Biotechnol 2019;37:186-92.  DOI  PubMed  PMC
               11.       Vonaesch P, Anderson M, Sansonetti PJ. Pathogens, microbiome and the host: emergence of the ecological Koch’s postulates. FEMS
                    Microbiol Rev 2018;42:273-92.  DOI  PubMed
               12.       Duvallet C, Gibbons SM, Gurry T, Irizarry RA, Alm EJ. Meta-analysis of gut microbiome studies identifies disease-specific and
                    shared responses. Nat Commun 2017;8:1784.  DOI  PubMed  PMC
               13.       Leffler DA, Lamont JT. Clostridium difficile infection. N Engl J Med 2015;372:1539-48.  DOI  PubMed
               14.       Clapp M, Aurora N, Herrera L, Bhatia M, Wilen E, Wakefield S. Gut microbiota’s effect on mental health: The gut-brain axis. Clin
                    Pract 2017;7:987.  DOI  PubMed  PMC
               15.       Usami M, Miyoshi M, Yamashita H. Gut microbiota and host metabolism in liver cirrhosis. World J Gastroenterol 2015;21:11597-
                    608.  DOI  PubMed  PMC
               16.       Gou W, Fu Y, Yue L, et al. Gut microbiota, inflammation, and molecular signatures of host response to infection. J Genet Genomics
                    2021;48:792-802.  DOI
               17.       Kunasegaran T, Balasubramaniam VRMT, Arasoo VJT, Palanisamy UD, Ramadas A. The modulation of gut microbiota composition
                    in the pathophysiology of gestational diabetes mellitus: a systematic review. Biology 2021;10:1027.  DOI  PubMed  PMC
               18.       Sircana A, Framarin L, Leone N, et al. Altered gut microbiota in type 2 diabetes: just a coincidence? Curr Diab Rep 2018;18:98.
                    DOI
               19.       Dodd CS, Grueber CE. Functional diversity within gut microbiomes: implications for conserving biodiversity. Conservation
                    2021;1:311-26.  DOI
               20.       Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. Diversity, stability and resilience of the human gut microbiota.
                    Nature 2012;489:220-30.  DOI  PubMed  PMC
               21.       Scholtens PA, Oozeer R, Martin R, Amor KB, Knol J. The early settlers: intestinal microbiology in early life. Annu Rev Food Sci
                    Technol 2012;3:425-47.  DOI  PubMed
               22.       Kujawska M, La Rosa SL, Roger LC, et al. Succession of bifidobacterium longum strains in response to a changing early life
                    nutritional environment reveals dietary substrate adaptations. iScience 2020;23:101368.  DOI  PubMed  PMC
               23.       Escalas A, Hale L, Voordeckers JW, et al. Microbial functional diversity: from concepts to applications. Ecol Evol 2019;9:12000-16.
                    DOI  PubMed  PMC
               24.       Coyte KZ, Rakoff-Nahoum S. Understanding competition and cooperation within the mammalian gut microbiome. Curr Biol
   67   68   69   70   71   72   73   74   75   76   77