Page 43 - Read Online
P. 43

Pavan et al. J Transl Genet Genom 2021;5:173-81  https://dx.doi.org/10.20517/jtgg.2021.18                                       Page 175

               Table 1. Summary of studies
                                        Number
                               Year of                   Control                                       Diagnostic  Prognostic  Tissue
                Ref.                    of     Cases            Sample    Methodology     Biomarker                                Specificity Sensitivity
                               publication  patients     group                                         value    value    concordance
                Reis et al. [11]  2015  82     34 PCa    48     Serum     Ms-SNuPE and    GADD45a      Yes      Yes      No        87%      94%
                                                         healthy          pyrosequencing
                                                         control
                        [10]
                Haldrup et al.  2018    815    705       110    Serum     MS-qPCR         ST6GALNAC3,   Yes     Yes      Yes       100%     67%
                                               PCa/ZNF660  healthy                        ZNF660, HAPLN3
                                               tested in   control
                                               different
                                               cohorts
                            [13]
                Menschikowski et al.  2018  2  2 PCa     NA     Serum     OBBPA-ddPCR     PLA2R1       Yes      No       No        NA       NA
                Brikun et al. [5]  2018  94    42 PCa    52     Urine (after   MS-qPCR by binary   ADCY4, AOX1rc,   Yes  No  No    71% after   89% after
                                                         healthy   DRE and at   presence (> 0) or   APC, CXCL14,                   DRE and FV DRE and
                                                         control  FV)     absence (< 0) of   EPHX3, GFRA2,                                  94% from
                                                                          methylation     GSTP1, HEMK1rc,                                   FV
                                                                                          KIFC2, MOXD1,
                                                                                          HOXA7, HOXB5,
                                                                                          HOXD3, HOXD9,
                                                                                          HOXD10, HOXD3a,
                                                                                          HOXD3b,
                                                                                          NEUROG3,
                                                                                          NODAL, RASSF5
                Brikun et al. [4]  2019  94    42 PCa    52     Urine (85   MS-qPCR by binary   PANEL ABOVE   Yes  No    No        76% from   81% from
                                                         healthy   after DRE and  presence (> 0) or   PLUS 13 additional           DRE-77%   DRE-93%
                                                         control  65 at FV)  absence (< 0) of   markers:                           after FV  after FV
                                                                          methylation     HOXA11as, KLK10,
                                                                                          GPR147, GPR62,
                                                                                          HOXD4rc,
                                                                                          HOXD3c, FRZB,
                                                                                          GRASPrc,
                                                                                          HOXBAS3,
                                                                                          HOXD8rc, RASSF1,
                                                                                          SLC16A5rc
                         [6]
                Nekrasov et al.  2019   64     31 PCa    33     Urine     qMSP            APC2, CDH1,   Yes     Yes      No        100%     78%
                                                         healthy                          FOXP1, FOXP2,
                                                         control                          FOXP3, FOXP4,
                                                                                          H1C1, HOXA9,
                                                                                          LRRC3B, MGMT,
                                                                                          NDRG4, PLCL2,
                                                                                          PTEN, UBE2E2,
                                                                                          VHL, WNT7A,
                                                                                          ZIC4
                        [16]
                O’Reilly et al.  2019   463    209 PCa/31 +  254   Urine  HumanMethylation450  Methylation array   Yes  Yes  Yes   76%      73%
   38   39   40   41   42   43   44   45   46   47   48