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Warawdekar et al.                                                                                                                                           CTCs from patients with metastatic breast cancer

           nucleus.  Figure 6  shows representative images of   the presence of CTCs in samples.
           two CTCs characterized as EpCAM and CK positive,
           with a well-defined nucleus and were negative for the   DISCUSSION
           leucocyte  antigen,  CD45.  Imaging  further  confirmed   We propose a workable method for the isolation and
                                                              enumeration  of CTCs wherein a two-tier protocol
                                                              of cell  isolation with an initial  separation  based  on
                                                              density gradient centrifugation, followed  by EpCAM
                                                              immunomagnetic-positive double enrichment has been
                                                              described and adopted. The enriched fraction of tumour
                                                              cells is further divided, one analyzed for enumeration
                                                              of CTCs using flow cytometry based on large size of
                                                              tumor cells, with the presence  of CK, EpCAM, and
                                                              the absence of CD45. Dissimilar expression levels of
                                                              EpCAM could compromise the detection of CTCs, [26,27]
                                                              hence,  the  initial  standardization  for  flow  and  QRT-
                                                              PCR analysis  was done with cell spiking  of cancer
                                                              cells from different breast cancer subtypes to assess
                                                              possible  differences.  Tumor cells  from the different
                                                              subtypes exhibited similar staining to EpCAM and CK
                                                              antibodies  and  could be clearly distinguished  from
                                                              Jurkat cells. As described for serial dilutions [Figure 2]
                                                              recovery and linearity showed reproducibility and were
                                                              highly consistent across independent experiments. A
                                                              positive correlation was observed between recovered
                                                              tumor events and expected tumor events. Based on
                                                              the serial  dilution  assay, the percentage  of tumor
                                                              cells recovered was not significantly different from the
                                                              percentage of tumor cells expected.

                                                              The flow cytometry protocol was validated with blood
                                                              samples obtained from patients with metastatic
                                                              breast cancer. Eighteen of these patients were with
                                                              tumor grade II-III and 17 were diagnosed with verified
                                                              metastasis. Clinical characteristics are as described
                                                              in Supplementary Table 1. Median age was 50 years
                                                              (range: 25-76 years). All, except two, were diagnosed
                                                              as invasive ductal carcinoma, the most common type
                                                              of  breast  cancer.  Hormone  receptor  status  showed
                                                              10 (45%) were ER-positive, 6 (27%), ER-negative,
                                                              equal number 9 (41%) PR-positive and PR-negative,
                                                              3 (14%) Her2-positive, and 13 (60%) Her2-negative.
                                                              CTCs showed a range of 1-85 per 10 mL of blood, with
                                                              an average of 23.35 ± 22.85. Twenty healthy women
                                                              volunteers were also included in this validation, with
                                                              values ranging from 0-14 per 10 mL of blood, with an
                                                              average of 5 ± 4. A cut-off of 10 and above has been
                                                              selected, based on these results.

                                                              For clinical samples  where  CTCs  were higher,
                                                              captured  cells were subjected to  morphological
           Figure 5: Standard curve with Strati et al. [23]  method done as   characterization and examined for presence of a
           described in the text. (A) Log number of EpCAM copies versus   nucleus.  Figure 6 shows representative images of
           EpCAM Ct values; (B) log number of CK19 copies versus CK19 Ct
           values; (C) log number of Muc-1 copies versus Muc-1 Ct values; (D)   two CTCs characterized as EpCAM and CK positive,
           log number of Her-2 copies versus Her-2 Ct values  with  a  well-defined  nucleus  and  negative  for  the
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