Page 130 - Read Online
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Page 24 of 25                       Zhong et al. Chem Synth 2023;3:27  https://dx.doi.org/10.20517/cs.2023.15

               105.      Wang J, Li Z, Willner I. Cascaded dissipative DNAzyme-driven layered networks guide transient replication of coded-strands as gene
                    models. Nat Commun 2022;13:4414.  DOI  PubMed  PMC
               106.      Grosso E, Amodio A, Ragazzon G, Prins LJ, Ricci F. Dissipative synthetic DNA-based receptors for the transient loading and release
                    of molecular cargo. Angew Chem Int Ed Engl 2018;57:10489-93.  DOI  PubMed
               107.      Deng J, Liu W, Sun M, Walther A. Dissipative organization of DNA oligomers for transient catalytic function. Angew Chem Int Ed
                    Engl 2022;61:e202113477.  DOI  PubMed  PMC
               108.      Deng J, Walther A. Fuel-driven transient DNA strand displacement circuitry with self-resetting function. J Am Chem Soc
                    2020;142:21102-9.  DOI  PubMed  PMC
               109.      Deng J, Walther A. ATP-powered molecular recognition to engineer transient multivalency and self-sorting 4D hierarchical systems.
                    Nat Commun 2020;11:3658.  DOI  PubMed  PMC
               110.      Reisler E, Egelman EH. Actin structure and function: what we still do not understand. J Biol Chem 2007;282:36133-7.  DOI
               111.      Grosso E, Ponzo I, Ragazzon G, Prins LJ, Ricci F. Disulfide-linked allosteric modulators for multi-cycle kinetic control of DNA-
                    based nanodevices. Angew Chem Int Ed Engl 2020;59:21058-63.  DOI  PubMed
               112.      Grosso E, Prins LJ, Ricci F. Transient DNA-based nanostructures controlled by redox inputs. Angew Chem Int Ed Engl
                    2020;59:13238-45.  DOI  PubMed
               113.      Mariottini D, Del Giudice D, Ercolani G, Di Stefano S, Ricci F. Dissipative operation of pH-responsive DNA-based nanodevices.
                    Chem Sci 2021;12:11735-9.  DOI  PubMed  PMC
               114.      Chen XM, Hou XF, Bisoyi HK, et al. Light-fueled transient supramolecular assemblies in water as fluorescence modulators. Nat
                    Commun 2021;12:4993.  DOI  PubMed  PMC
               115.      Deng J, Bezold D, Jessen HJ, Walther A. Multiple light control mechanisms in ATP-fueled non-equilibrium DNA systems. Angew
                    Chem Int Ed Engl 2020;59:12084-92.  DOI  PubMed  PMC
               116.      Wang J, Li Z, Zhou Z, et al. DNAzyme- and light-induced dissipative and gated DNA networks. Chem Sci 2021;12:11204-12.  DOI
                    PubMed  PMC
               117.      Chen Y, Wang M, Mao C. An autonomous DNA nanomotor powered by a DNA enzyme. Angew Chem Int Ed Engl 2004;43:3554-7.
                    DOI
               118.      Grosso E, Ragazzon G, Prins LJ, Ricci F. Fuel-responsive allosteric DNA-based aptamers for the transient release of ATP and
                    cocaine. Angew Chem Int Ed Engl 2019;58:5582-6.  DOI  PubMed
               119.      Grosso E, Irmisch P, Gentile S, Prins LJ, Seidel R, Ricci F. Dissipative Control over the toehold-mediated DNA strand displacement
                    reaction. Angew Chem Int Ed Engl 2022;61:e202201929.  DOI  PubMed  PMC
               120.      Agarwal S, Franco E. Enzyme-driven assembly and disassembly of hybrid DNA-RNA nanotubes. J Am Chem Soc 2019;141:7831-41.
                    DOI  PubMed
               121.      Gentile S, Del Grosso E, Pungchai PE, Franco E, Prins LJ, Ricci F. Spontaneous reorganization of DNA-based polymers in higher
                    ordered structures fueled by RNA. J Am Chem Soc 2021;143:20296-301.  DOI  PubMed  PMC
               122.      Bucci J, Irmisch P, Del Grosso E, Seidel R, Ricci F. Orthogonal enzyme-driven timers for DNA strand displacement reactions. J Am
                    Chem Soc 2022;144:19791-8.  DOI  PubMed  PMC
               123.      Abraham EH, Okunieff P, Scala S, et al. Cystic fibrosis transmembrane conductance regulator and adenosine triphosphate. Science
                    1997;275:1324-6.  DOI
               124.      Finger TE, Danilova V, Barrows J, et al. ATP signaling is crucial for communication from taste buds to gustatory nerves. Science
                    2005;310:1495-9.  DOI
               125.      Shi Y, Tang M, Sun C, et al. ATP mimics pH-dependent dual peroxidase-catalase activities driving H O decomposition. CCS Chem
                                                                                      2  2
                    2019;1:373-83.  DOI
               126.      Heinen L, Walther A. Programmable dynamic steady states in ATP-driven nonequilibrium DNA systems. Sci Adv 2019;5:eaaw0590.
                    DOI  PubMed  PMC
               127.      Sun M, Deng J, Walther A. Communication and cross-regulation between chemically fueled sender and receiver reaction networks.
                    Angew Chem Int Ed Engl 2023;62:e202214499.  DOI  PubMed  PMC
               128.      Kim J, Winfree E. Synthetic in vitro transcriptional oscillators. Mol Syst Biol 2011;7:465.  DOI  PubMed  PMC
               129.      Weitz M, Kim J, Kapsner K, Winfree E, Franco E, Simmel FC. Diversity in the dynamical behaviour of a compartmentalized
                    programmable biochemical oscillator. Nat Chem 2014;6:295-302.  DOI  PubMed
               130.      Kim J, White KS, Winfree E. Construction of an in vitro bistable circuit from synthetic transcriptional switches. Mol Syst Biol
                    2006;2:68.  DOI  PubMed  PMC
               131.      Schaffter SW, Schulman R. Building in vitro transcriptional regulatory networks by successively integrating multiple functional
                    circuit modules. Nat Chem 2019;11:829-38.  DOI  PubMed
               132.      Subsoontorn P, Kim J, Winfree E. Ensemble Bayesian analysis of bistability in a synthetic transcriptional switch. ACS Synth Biol
                    2012;1:299-316.  DOI
               133.      Franco E, Friedrichs E, Kim J, et al. Timing molecular motion and production with a synthetic transcriptional clock. Proc Natl Acad
                    Sci U S A 2011;108:E784-93.  DOI  PubMed  PMC
               134.      Fujii T, Rondelez Y. Predator-prey molecular ecosystems. ACS Nano 2013;7:27-34.  DOI  PubMed
               135.      Baccouche A, Montagne K, Padirac A, Fujii T, Rondelez Y. Dynamic DNA-toolbox reaction circuits: a walkthrough. Methods
                    2014;67:234-49.  DOI  PubMed
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