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73. Liu H, Yang Q, Peng R, et al. Artificial signal feedback network mimicking cellular adaptivity. J Am Chem Soc 2019;141:6458-61.
DOI PubMed PMC
74. Zhu S, Zhang Q. Implementing feedforward neural network using DNA strand displacement reactions. NANO 2021;16:2150001.
DOI
75. Yue L, Wang S, Wulf V, et al. Consecutive feedback-driven constitutional dynamic networks. Proc Natl Acad Sci U S A
2019;116:2843-8. DOI PubMed PMC
76. Bleris L, Xie Z, Glass D, Adadey A, Sontag E, Benenson Y. Synthetic incoherent feedforward circuits show adaptation to the amount
of their genetic template. Mol Syst Biol 2011;7:519. DOI PubMed PMC
77. Haley NEC, Ouldridge TE, Mullor Ruiz I, et al. Design of hidden thermodynamic driving for non-equilibrium systems via mismatch
elimination during DNA strand displacement. Nat Commun 2020;11:2562. DOI PubMed PMC
78. Basu S, Mehreja R, Thiberge S, Chen MT, Weiss R. Spatiotemporal control of gene expression with pulse-generating networks. Proc
Natl Acad Sci U S A 2004;101:6355-60. DOI PubMed PMC
79. Yue L, Wang S, Lilienthal S, et al. Intercommunication of DNA-based constitutional dynamic networks. J Am Chem Soc
2018;140:8721-31. DOI
80. Wang C, Yue L, Willner I. Controlling biocatalytic cascades with enzyme-DNA dynamic networks. Nat Catal 2020;3:941-50. DOI
81. Wang C, O'Hagan MP, Neumann E, Nechushtai R, Willner I. Integration of photocatalytic and dark-operating catalytic biomimetic
transformations through DNA-based constitutional dynamic networks. Nat Commun 2021;12:4224. DOI PubMed PMC
82. Egolf DA. Statistical mechanics. Far from equilibrium. Science 2002;296:1813-5. DOI PubMed
83. Goldbeter A. Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves. Philos Trans A Math
Phys Eng Sci 2018;376:20170376. DOI PubMed PMC
84. Rizzoli SO. Synaptic vesicle recycling: steps and principles. EMBO J 2014;33:788-822. DOI PubMed PMC
85. David-Pfeuty T, Erickson HP, Pantaloni D. Guanosinetriphosphatase activity of tubulin associated with microtubule assembly. Proc
Natl Acad Sci U S A 1977;74:5372-6. DOI PubMed PMC
86. Murrell M, Oakes PW, Lenz M, Gardel ML. Forcing cells into shape: the mechanics of actomyosin contractility. Nat Rev Mol Cell
Biol 2015;16:486-98. DOI PubMed PMC
87. Schaffter SW, Chen KL, O’Brien J, Noble M, Murugan A, Schulman R. Standardized excitable elements for scalable engineering of
far-from-equilibrium chemical networks. Nat Chem 2022;14:1224-32. DOI PubMed
88. Li Z, Wang J, Willner I. Transient out-of-equilibrium nucleic acid-based dissipative networks and their applications. Adv Funct
Materials 2022;32:2200799. DOI
89. Grosso E, Franco E, Prins LJ, Ricci F. Dissipative DNA nanotechnology. Nat Chem 2022;14:600-13. DOI PubMed
90. De S, Klajn R. Dissipative self-assembly driven by the consumption of chemical fuels. Adv Mater 2018;30:e1706750. DOI PubMed
91. Te Brinke E, Groen J, Herrmann A, et al. Dissipative adaptation in driven self-assembly leading to self-dividing fibrils. Nat
Nanotechnol 2018;13:849-55. DOI
92. Liu Q, Li H, Yu B, et al. DNA-based dissipative assembly toward nanoarchitectonics. Adv Funct Materials 2022;32:2201196. DOI
93. Sorrenti A, Leira-Iglesias J, Sato A, Hermans TM. Non-equilibrium steady states in supramolecular polymerization. Nat Commun
2017;8:15899. DOI PubMed PMC
94. Busiello DM, Liang S, Piazza F, De Los Rios P. Dissipation-driven selection of states in non-equilibrium chemical networks.
Commun Chem 2021;4:16. DOI PubMed PMC
95. Wang S, Yue L, Wulf V, Lilienthal S, Willner I. Dissipative constitutional dynamic networks for tunable transient responses and
catalytic functions. J Am Chem Soc 2020;142:17480-8. DOI
96. Zhou Z, Ouyang Y, Wang J, Willner I. Dissipative gated and cascaded DNA networks. J Am Chem Soc 2021;143:5071-9. DOI
PubMed
97. Wang C, Zhou Z, Ouyang Y, et al. Gated dissipative dynamic artificial photosynthetic model systems. J Am Chem Soc
2021;143:12120-8. DOI
98. Dehne H, Reitenbach A, Bausch AR. Transient self-organisation of DNA coated colloids directed by enzymatic reactions. Sci Rep
2019;9:7350. DOI PubMed PMC
99. Li N, Zhao Y, Liu Y, et al. Self-resetting molecular probes for nucleic acids detection enabled by fuel dissipative systems. Nano
Today 2021;41:101308. DOI PubMed PMC
100. Ouyang Y, Zhang P, Willner I. Dissipative biocatalytic cascades and gated transient biocatalytic cascades driven by nucleic acid
networks. Sci Adv 2022;8:eabn3534. DOI PubMed PMC
101. Dong J, Ouyang Y, Wang J, O'Hagan MP, Willner I. Assembly of dynamic gated and cascaded transient DNAzyme networks. ACS
Nano 2022;16:6153-64. DOI PubMed PMC
102. Luo M, Xuan M, Huo S, et al. Four-dimensional deoxyribonucleic acid-gold nanoparticle assemblies. Angew Chem Int Ed Engl
2020;59:17250-5. DOI PubMed PMC
103. Ouyang Y, Zhang P, Manis-Levy H, Paltiel Y, Willner I. Transient dissipative optical properties of aggregated Au nanoparticles,
CdSe/ZnS quantum dots, and supramolecular nucleic acid-stabilized Ag nanoclusters. J Am Chem Soc 2021;143:17622-32. DOI
PubMed
104. Li Z, Wang J, Zhou Z, O'Hagan MP, Willner I. Gated transient dissipative dimerization of DNA tetrahedra nanostructures for
programmed DNAzymes catalysis. ACS Nano 2022;16:3625-36. DOI PubMed PMC