Page 42 - Read Online

Page 20 of 20 Horwell et al. Microbiome Res Rep 2025;4:1 https://dx.doi.org/10.20517/mrr.2024.32

185. Lundelin K, Poussa T, Salminen S, Isolauri E. Long-term safety and efficacy of perinatal probiotic intervention: evidence from a
follow-up study of four randomized, double-blind, placebo-controlled trials. Pediatr Allergy Immunol 2017;28:170-5. DOI PubMed
186. Rutten NB, Gorissen DM, Eck A, et al. Long term development of gut microbiota composition in atopic children: impact of
probiotics. PLoS One 2015;10:e0137681. DOI PubMed PMC
187. Dhongade AR, Joshi SS, Kulkarni SV, et al. The efficacy and safety of a bacillus probiotic combination for the treatment of acute
diarrhea in children: a double-blind, randomized, placebo-controlled multicentric study. Pediatric Infectious Disease 2022;4:86-91.
DOI
188. Turco R, Martinelli M, Miele E, et al. Proton pump inhibitors as a risk factor for paediatric Clostridium difficile infection. Aliment
Pharmacol Ther 2010;31:754-9. DOI PubMed
189. Huang H, Jiang J, Wang X, Jiang K, Cao H. Exposure to prescribed medication in early life and impacts on gut microbiota and
disease development. EClinicalMedicine 2024;68:102428. DOI PubMed PMC
190. Joice R, Yasuda K, Shafquat A, Morgan XC, Huttenhower C. Determining microbial products and identifying molecular targets in
the human microbiome. Cell Metab 2014;20:731-41. DOI PubMed PMC
191. Marcy Y, Ouverney C, Bik EM, et al. Dissecting biological “dark matter” with single-cell genetic analysis of rare and uncultivated
TM7 microbes from the human mouth. Proc Natl Acad Sci U S A 2007;104:11889-94. DOI PubMed PMC
192. Yan Y, Nguyen LH, Franzosa EA, Huttenhower C. Strain-level epidemiology of microbial communities and the human microbiome.
Genome Med 2020;12:71. DOI PubMed PMC
193. Daniel BBJ, Steiger Y, Sintsova A, et al. Assessing microbiome population dynamics using wild-type isogenic standardized hybrid
(WISH)-tags. Nat Microbiol 2024;9:1103-16. DOI PubMed PMC
194. Jansson JK. Tracking genetically engineered microorganisms in nature. Curr Opin Biotechnol 1995;6:275-83. DOI PubMed
195. Geva-Zatorsky N, Alvarez D, Hudak JE, et al. In vivo imaging and tracking of host-microbiota interactions via metabolic labeling of
gut anaerobic bacteria. Nat Med 2015;21:1091-100. DOI PubMed PMC
196. Rivas-Ruiz F, Pérez-Vicente S, González-Ramírez AR. Bias in clinical epidemiological study designs. Allergol Immunopathol
(Madr) 2013;41:54-9. DOI PubMed
197. Turin CG, Ochoa TJ. The role of maternal breast milk in preventing infantile diarrhea in the developing world. Curr Trop Med Rep
2014;1:97-105. DOI PubMed PMC
198. Ciampo LA, Del Ciampo IRL. Breastfeeding and the benefits of lactation for women’s health. Rev Bras Ginecol Obstet 2018;40:354-
9. DOI PubMed PMC
199. Hornef MW, Torow N. ‘Layered immunity’ and the ‘neonatal window of opportunity’-timed succession of non-redundant phases to
establish mucosal host-microbial homeostasis after birth. Immunology 2020;159:15-25. DOI PubMed PMC
200. repair. Science 2019;366:eaax6624. DOI PubMed PMC
Gensollen T, Iyer SS, Kasper DL, Blumberg RS. How colonization by microbiota in early life shapes the immune system. Science
2016;352:539-44. DOI PubMed PMC
+
+
201. Torow N, Yu K, Hassani K, et al. Active suppression of intestinal CD4 TCRαβ T-lymphocyte maturation during the postnatal
period. Nat Commun 2015;6:7725. DOI PubMed PMC
202. Sjögren YM, Tomicic S, Lundberg A, et al. Influence of early gut microbiota on the maturation of childhood mucosal and systemic
immune responses. Clin Exp Allergy 2009;39:1842-51. DOI PubMed
203. Lu L, Yu Y, Guo Y, Wang Y, Chang EB, Claud EC. Transcriptional modulation of intestinal innate defense/inflammation genes by
preterm infant microbiota in a humanized gnotobiotic mouse model. PLoS One 2015;10:e0124504. DOI PubMed PMC
204. Reynolds HM, Bettini ML. Early-life microbiota-immune homeostasis. Front Immunol 2023;14:1266876. DOI PubMed PMC
205. Ronan V, Yeasin R, Claud EC. Childhood development and the microbiome-the intestinal microbiota in maintenance of health and
development of disease during childhood development. Gastroenterology 2021;160:495-506. DOI PubMed PMC
206. Constantinides MG, Belkaid Y. Early-life imprinting of unconventional T cells and tissue homeostasis. Science 2021;374:eabf0095.
DOI PubMed PMC
207. Constantinides MG, Link VM, Tamoutounour S, et al. MAIT cells are imprinted by the microbiota in early life and promote tissue
208. Ottman N, Ruokolainen L, Suomalainen A, et al. Soil exposure modifies the gut microbiota and supports immune tolerance in a
mouse model. J Allergy Clin Immunol 2019;143:1198-06.e12. DOI PubMed
209. Timm S, Svanes C, Janson C, et al. Place of upbringing in early childhood as related to inflammatory bowel diseases in adulthood: a
population-based cohort study in Northern Europe. Eur J Epidemiol 2014;29:429-37. DOI PubMed PMC
210. Feng M, Yang Z, Pan L, et al. Associations of early life exposures and environmental factors with asthma among children in rural and
urban areas of Guangdong, China. Chest 2016;149:1030-41. DOI PubMed