Page 62 - Read Online
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Stuehler et al. Microbiome Res Rep. 2025;4:19  https://dx.doi.org/10.20517/mrr.2024.84  Page 15 of 16

               22.      Lefoulon E, Clark T, Borveto F, et al. Pseudoscorpion Wolbachia symbionts: diversity and evidence for a new supergroup S. BMC
                   Microbiol. 2020;20:188.  DOI  PubMed  PMC
               23.      Cicero JM, Brown JK. A stationary tweezer platform for high throughput dissections of minute arthropods and extirpation of their
                   minute organs. MethodsX. 2021;8:101317.  DOI  PubMed  PMC
               24.      Grabherr MG, Haas BJ, Yassour M, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat
                   Biotechnol. 2011;29:644-52.  DOI  PubMed  PMC
               25.      Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. Graph-based genome alignment and genotyping with HISAT2 and HISAT-
                   genotype. Nat Biotechnol. 2019;37:907-15.  DOI  PubMed  PMC
               26.      Manni M, Berkeley MR, Seppey M, Simão FA, Zdobnov EM. BUSCO update: novel and streamlined workflows along with broader
                   and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes. Mol Biol Evol. 2021;38:4647-54.  DOI
                   PubMed  PMC
               27.      Okonechnikov K, Golosova O, Fursov M; UGENE team. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics.
                   2012;28:1166-7.  DOI  PubMed
               28.      Uday J, Puttaraju HP. Comparative analysis of Wolbachia surface protein in D. melanoagster, A. tabida and B. malayi. Bioinformation.
                   2012;8:711-5.  DOI  PubMed  PMC
               29.      Kanehisa M. Toward understanding the origin and evolution of cellular organisms. Protein Sci. 2019;28:1947-51.  DOI  PubMed
                   PMC
               30.      Kanehisa M, Furumichi M, Sato Y, Ishiguro-Watanabe M, Tanabe M. KEGG: integrating viruses and cellular organisms. Nucleic
                   Acids Res. 2021;49:D545-51.  DOI  PubMed  PMC
               31.      Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28:27-30.  DOI  PubMed  PMC
               32.      Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A. ExPASy: the proteomics server for in-depth protein knowledge
                   and analysis. Nucleic Acids Res. 2003;31:3784-8.  DOI  PubMed  PMC
               33.      Van Meer MM, Witteveldt J, Stouthamer R. Phylogeny of the arthropod endosymbiont Wolbachia based on the wsp gene. Insect Mol
                   Biol. 1999;8:399-408.  DOI  PubMed
               34.      Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. Jalview Version 2 - a multiple sequence alignment editor and analysis
                   workbench. Bioinformatics. 2009;25:1189-91.  DOI  PubMed  PMC
               35.      Shen  W,  Le  S,  Li  Y,  Hu  F.  SeqKit:  a  cross-platform  and  ultrafast  toolkit  for  FASTA/Q  file  manipulation.  PLoS  One.
                   2016;11:e0163962.  DOI  PubMed  PMC
               36.      Ankenbrand MJ, Hohlfeld S, Hackl T, Förster F. AliTV - interactive visualization of whole genome comparisons. PeerJ Computer
                   Science. 2017;3:e116.  DOI
               37.      Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA. BLAST ring image generator (BRIG): simple prokaryote genome comparisons.
                   BMC Genomics. 2011;12:402.  DOI  PubMed  PMC
               38.      Correa CC, Ballard JWO. Wolbachia associations with insects: winning or losing against a master manipulator. Front Ecol Evol.
                   2016;3:153.  DOI
               39.      Stouthamer R, Breeuwer JA, Hurst GD. Wolbachia pipientis: microbial manipulator of arthropod reproduction. Annu Rev Microbiol.
                   1999;53:71-102.  DOI  PubMed
               40.      Singh ND. Wolbachia infection associated with increased recombination in drosophila. G3. 2019;9:229-37.  DOI  PubMed  PMC
               41.      Zhou W, Rousset F, O’Neil S. Phylogeny and PCR-based classification of Wolbachia strains using wsp gene sequences. Proc Biol Sci.
                   1998;265:509-15.  DOI  PubMed  PMC
               42.      Baldo L, Dunning Hotopp JC, Jolley KA, et al. Multilocus sequence typing system for the endosymbiont Wolbachia pipientis. Appl
                   Environ Microbiol. 2006;72:7098-110.  DOI  PubMed  PMC
               43.      Chapman EG, Messing RH, Harwood JD. Determining the origin of the coffee berry borer invasion of Hawaii. Ann Entomol Soc Am.
                   2015;108:585-92.  DOI
               44.      Klasson L, Walker T, Sebaihia M, et al. Genome evolution of Wolbachia strain wPip from the Culex pipiens group. Mol Biol Evol.
                   2008;25:1877-87.  DOI  PubMed  PMC
               45.      Saha S, Hunter WB, Reese J, et al. Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi
                   draft genome. PLoS One. 2012;7:e50067.  DOI  PubMed  PMC
               46.      Wu M, Sun LV, Vamathevan J, et al. Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome
                   overrun by mobile genetic elements. PLoS Biol. 2004;2:E69.  DOI
               47.      Al-Khodor S, Price CT, Kalia A, Abu Kwaik Y. Functional diversity of ankyrin repeats in microbial proteins. Trends Microbiol.
                   2010;18:132-9.  DOI  PubMed  PMC
               48.      Hryniewicz-Jankowska A, Czogalla A, Bok E, Sikorsk AF. Ankyrins, multifunctional proteins involved in many cellular pathways.
                   Folia Histochem Cytobiol. 2002;40:239-49.  PubMed
               49.      Voronin DA, Kiseleva EV. [Functional role of proteins containing ankyrin repeats]. Tsitologiia. 2007;49:989-99.  PubMed
               50.      Kremer N, Voronin D, Charif D, Mavingui P, Mollereau B, Vavre F. Wolbachia interferes with ferritin expression and iron
                   metabolism in insects. PLoS Pathog. 2009;5:e1000630.  DOI  PubMed  PMC
               51.      Ebrahimi K, Hagedoorn PL, Hagen WR. Unity in the biochemistry of the iron-storage proteins ferritin and bacterioferritin. Chem Rev.
                   2015;115:295-326.  DOI  PubMed
               52.      Foster J, Ganatra M, Kamal I, et al. The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic
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