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Guerra et al. J Transl Genet Genom 2019;3:9. I  https://doi.org/10.20517/jtgg.2018.03                                               Page 3 of 31

               Table 1. Genes potentially involved in speech and language disorders included in this review
                Gene    Name            Locus    Disorder Methods  Comments  Other phenotypes  Ref.
                ABCC13  ATP-binding cassette  21q11.2  DLD  GWAS                            [125]
                        subfamily C, member
                        13
                ANKK1   Ankyrin Repeat   11q23.2  SSD   CG                                  [162]
                        And Kinase Domain
                        Containing 1
                ANKRD12  Ankyrin Repeat   18p11.22  CAS  WES      Additive                  [88,91]
                        Domain 12                                 effects
                                                                  Uncertain
                                                                  significance
                                                                  according to
                                                                  Thevenon et
                                                                  al. [91]  2012
                AP4E1   Adaptor Related   15q21.2  ST   WES       Replicated in   - Spastic paraplegia 51,  [68]
                        Protein Complex 4                         several   autosomal recessive
                        Subunit Epsilon 1                         ethnic groups
                APOE    Apolipoprotein E  19q13.32  AP  TM        Different   - Alzheimer disease-2   [105-108]
                                                                  phenotype   - Hyperlipoproteinemia
                                                                  expression   type III
                                                                  according to its  - Lipoprotein
                                                                  alleles   glomerulopathy
                                                                            - Sea-blue histiocyte
                                                                            disease
                                                                            - Macular degeneration,
                                                                            age-related
                                                                            - Coronary artery
                                                                            disease, severe,
                                                                            susceptibility to
                ARL17 A/B  ADP ribosylation factor  17q21.13/  DL  CG                       [166]
                        like GTPase 17A/B  17q21.31
                ATP13A4  ATPase 13A4    3q29     CAS    WES       Additive                  [90]
                                                                  effects
                ATP2C2  ATPase Secretory   16q24.1  DLD  GWLATM CG                          [120,191]
                                2+
                        Pathway Ca               ASD
                        Transporting 2
                BDNF    Brain Derived   11p14.1  SSD    CG                                  [162]
                        Neurotrophic Factor
                C2ORF3  GC-Rich Sequence   2p12  DL     GWLA      Coregulator               [158]
                        DNA-Binding Factor 2                      Replicated
                CDH18   Cadherin 18     5p14.3   CAS    WES                                 [88]
                CHD3    Chromodomain    17p13.1  CAS    WGS                                 [89]
                        Helicase DNA Binding
                        Protein 3
                CHRNA3  Cholinergic Receptor   15q25.1  SSD  CG             - Lung cancer   [162]
                        Nicotinic Alpha 3                                   susceptibility 2
                        Subunit
                CMIP    C-Maf Inducing Protein 16q23.2-q23.3 DLD, DL,  TM  Replicated       [120,161,191]
                                                 ASD
                CNTNAP1  Contactin Associated  17q21.2  CAS  WES  Additive   - Lethal congenital   [90]
                        Protein 1                                 effects   contracture syndrome 7
                                                                  Not associated
                                                                  with ST
                CNTNAP2  Contactin Associated  7q35-q36  DLD,   GWAS CG  Replicated in   - Cortical dysplasia-focal [60,76,90,115,117,180]
                        Protein 2                CAS,             several SLD  epilepsy syndrome
                                                 ST DT            Not associated  - Pitt-Hopkins like
                                                 ASD?             with      syndrome 1
                                                                  psychiatric
                                                                  conditions
                COL4A2  Collagen Type IV alpha  13q34  DLD  GWAS            - Porencephaly 2  [128]
                        2                                                   - Susceptibility
                                                                            to hemorrhage,
                                                                            intracerebral
                COMT    Cathecol-O-     22q11.21  DL    CG                  - Susceptibility to panic  [160]
                        MethylTransferase                                   disorder
                                                                            - Susceptibility to
                                                                            Schizophrenia
                CTTNBP2  Cortactin Binding   7q31.31  ASD  TM                               [186]
                        Protein 2
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