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Page 4 of 22            Borrego-Ruiz et al. Microbiome Res Rep. 2025;4:20  https://dx.doi.org/10.20517/mrr.2024.78

               Table 1. Influence of probiotic and prebiotic supplementation during pregnancy and early life on GM composition and diversity in
               infants
                Ref.      Probiotics and prebiotics  Effect of probiotic and prebiotic supplementation on infant GM
                      [27]
                Rinne et al.  L. rhamnosus strain GG  At six months, counts of Bifidobacterium and Lactobacillus/Enterococcus were greater in
                                              breastfed infants compared to those fed formula. At twelve months, infants who were
                                              breastfed for three months and supplemented with probiotics exhibited higher levels of IgM,
                                              IgA, and IgG-secreting cells compared to those who received placebo
                Gueimonde   L. rhamnosus strain GG  At five days of age, infants whose mothers were supplemented with probiotics had significantly
                et al. [28]                   higher colonization by B. breve compared to control, but this effect did not persist at three
                                              weeks. In addition, maternal supplementation with L. rhamnosus did not substantially enhance
                                              the gut bifidobacterial diversity in infants at three weeks
                      [29]
                Rinne et al.  L. rhamnosus strain GG  Probiotic supplementation during the early months of life did not substantially affect the long-
                                              term composition of the gut microbiota, with bifidobacteria remaining the predominant
                                              microbiota. At six months, the feces of the placebo group contained a higher abundance of
                                              clostridia compared to the probiotic group. After two years of follow-up, the probiotic group
                                              showed a lower presence of lactobacilli/enterococci and clostridia than the placebo group,
                                              highlighting the role of clostridia as an indicator of microbiota progression in healthy infants
                Grönlund   B. adolescentis and B. bifidum  Only infants born to allergic, atopic mothers were colonized with B. adolescentis. The
                et al. [30]                   predominant species found in breast milk was B. longum. Allergic mothers had notably lower
                                              levels of bifidobacteria in their breast milk compared to non-allergic mothers, and their infants
                                              also displayed reduced bifidobacteria counts in their feces
                Kukkonen   Probiotic cocktail: L. rhamnosus  At three and six months, infants in the probiotic group exhibited a significantly higher
                  [31]
                et al.    strain GG, L. rhamnosus strain   frequency of colonization by lactobacilli and Propionibacterium. Fecal counts of total
                          LC705, B. breve strain Bb99 and  bifidobacteria and lactobacilli were notably higher at six months. No significant differences
                          Propionibacterium freudenreichii  were found between the groups regarding fecal bacterial colonization at two years of age.
                          subsp. shermanii strain JS   Probiotic treatment presented a negative correlation between the occurrence of atopic
                          Prebiotic: GOS      diseases and gut colonization by probiotics
                Abrahamsson  L. reuteri       At five days of age, the prevalence of L. reuteri was notably higher in the probiotic group
                  [32]
                et al.                        compared to the placebo group. Despite ongoing supplementation, the prevalence of the
                                              probiotic decreased over time in the infants
                Niers et al. [33]  A mixture of probiotic bacteria  The administration of the probiotic bacterial cocktail demonstrated a preventive effect on
                          (B. bifidum, B. animalis subsp.   eczema incidence in high-risk children, with this effect lasting throughout the first two years of
                          lactis, and L. lactis) Akkermansia muciniphila
                                              life. The intervention group showed significantly higher colonization rates and greater numbers
                                              of L. lactis
                Grönlund   Combination 1: L. rhamnosus +   Bifidobacterium genus levels at one month and B. longum levels at six months were correlated
                  [34]
                et al.    B. longum           between mothers and their infants. By six months, the probiotic intervention significantly
                          Combination 2:      influenced the mother-infant relationship in fecal bifidobacterial counts, although no notable
                          Lacticaseibacillus paracasei + B.   effects were observed on colonization frequencies, diversity, and similarity indices. Maternal
                          longum              colonization with B. bifidum had the most consistent impact on the infant’s bifidobacterial
                                              microbiota
                Grześkowiak   Combination 1: L. rhamnosus   At the genus level, Bifidobacterium counts varied significantly across the study groups, with the
                et al. [35]  strain LPR + B. longum strain   lowest counts observed in the combination 1 group compared to the placebo. However, the
                          BL999               relative abundance of Bifidobacterium did not show significant differences between the groups.
                          Combination 2: L. paracasei   Infants whose mothers received combination 1 probiotics exhibited a notable difference in the
                          strain ST11 + B. longum strain   relative abundance of the Lactobacillus-Enterococcus group compared to the placebo group. No
                          BL999               other significant differences were observed between the probiotic and placebo groups in the
                                              relative abundance of key bacterial groups, including Prevotella, Clostridium histolyticum, and
                      [36]
                Ismail et al.  L. rhamnosus strain GG  Prenatal supplementation with L. rhamnosus did not significantly influence the fecal microbial
                                              diversity in infants at seven days of age
                       [37]
                Pärtty et al.  Probiotic: L. rhamnosus strain   The placebo group exhibited a higher percentage of Clostridium histolyticum in their stools
                          GG.                 compared to the probiotic group. Additionally, the ratio of Lactobacillus-Lactococcus-
                          Prebiotics: Mixture of GOS and  Enterococcus to the total bacterial count was greater in excessive criers than in contented
                          polydextrose        infants at one month of age. The species composition of Bifidobacterium also varied between
                                              the groups, with B. longum subsp. infantis being less abundant in the stools of excessive criers
                                              compared to contented infants
                Enomoto   B. longum strain BB536 and B.   At four months of age, infants in the probiotic group showed a significantly higher relative
                  [38]
                et al.    breve strain M-16 V  abundance of members of the phylum Bacteroidota compared to the control. No significant
                                              differences were obtained in stool samples collected at ten months of age
                       [39]
                Bisanz et al.  L. rhamnosus strain GR-1  Infants between 10 and 25 days of age whose mothers were supplemented with probiotics
                                              exhibited a threefold increase in the relative abundance of Bifidobacterium and a reduction in
                                              Enterobacteriaceae compared to the control group
                       [40]
                Rutten et al.  B. bifidum, B. animalis subsp.   During the supplementation period, the probiotic group showed a higher abundance and
                          lactis and L. lactis  prevalence of probiotic species, but this difference diminished once supplementation ceased.
                                              At one month of age, bifidobacteria were significantly more abundant in the probiotic group,
                                              while L. lactis was significantly higher at both two weeks and one month. L. lactis was not
                                              detected in the placebo group during the intervention and was significantly more abundant at
                                              two years in the probiotic group
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