Page 66 - Read Online

Kleerebezem et al. Microbiome Res Rep 2024;3:46 https://dx.doi.org/10.20517/mrr.2024.48 Page 13 of 14

27. Duar RM, Lin XB, Zheng J, et al. Lifestyles in transition: evolution and natural history of the genus Lactobacillus. FEMS Microbiol
Rev 2017;41:S27-48. DOI PubMed
28. Molenaar D, Bringel F, Schuren FH, de Vos WM, Siezen RJ, Kleerebezem M. Exploring Lactobacillus plantarum genome diversity by
using microarrays. J Bacteriol 2005;187:6119-27. DOI PubMed PMC
29. Fuhren J, Rösch C, Ten Napel M, Schols HA, Kleerebezem M. Synbiotic matchmaking in Lactobacillus plantarum: substrate
screening and gene-trait matching to characterize strain-specific carbohydrate utilization. Appl Environ Microbiol 2020;86:e01081-20.
DOI PubMed PMC
30. Logtenberg MJ, Akkerman R, Hobé RG, et al. Structure-specific fermentation of galacto-oligosaccharides, isomalto-oligosaccharides
and isomalto/malto-polysaccharides by infant fecal microbiota and impact on dendritic cell cytokine responses. Mol Nutr Food Res
2021;65:e2001077. DOI PubMed PMC
31. Logtenberg MJ, Donners KMH, Vink JCM, et al. Touching the high complexity of prebiotic vivinal galacto-oligosaccharides using
porous graphitic carbon ultra-high-performance liquid chromatography coupled to mass spectrometry. J Agric Food Chem
2020;68:7800-8. DOI PubMed PMC
32. Fuhren J, Schwalbe M, Peralta-Marzal L, Rösch C, Schols HA, Kleerebezem M. Phenotypic and genetic characterization of
differential galacto-oligosaccharide utilization in Lactobacillus plantarum. Sci Rep 2020;10:21657. DOI PubMed PMC
33. Bovee-Oudenhoven IM, Wissink ML, Wouters JT, Van der Meer R. Dietary calcium phosphate stimulates intestinal lactobacilli and
decreases the severity of a salmonella infection in rats. J Nutr 1999;129:607-12. DOI PubMed
34. Govers MJ, Termont DS, Lapre JA, Kleibeuker JH, Vonk RJ, Van der Meer R. Calcium in milk products precipitates intestinal fatty
acids and secondary bile acids and thus inhibits colonic cytotoxicity in humans. Cancer Res 1996;56:3270-5. PubMed
35. Govers MJ, Van der Meet R. Effects of dietary calcium and phosphate on the intestinal interactions between calcium, phosphate, fatty
acids, and bile acids. Gut 1993;34:365-70. DOI PubMed PMC
36. Begley M, Gahan CG, Hill C. The interaction between bacteria and bile. FEMS Microbiol Rev 2005;29:625-51. DOI PubMed
37. Bachmann H, Bruggeman FJ, Molenaar D, Branco Dos Santos F, Teusink B. Public goods and metabolic strategies. Curr Opin
Microbiol 2016;31:109-15. DOI PubMed
38. Cordero OX, Ventouras LA, DeLong EF, Polz MF. Public good dynamics drive evolution of iron acquisition strategies in natural
bacterioplankton populations. Proc Natl Acad Sci U S A 2012;109:20059-64. DOI PubMed PMC
39. Gore J, Youk H, van Oudenaarden A. Snowdrift game dynamics and facultative cheating in yeast. Nature 2009;459:253-6. DOI
PubMed PMC
40. Kümmerli R, Santorelli LA, Granato ET, et al. Co-evolutionary dynamics between public good producers and cheats in the bacterium
Pseudomonas aeruginosa. J Evol Biol 2015;28:2264-74. DOI PubMed
41. Fuhren J, Schwalbe M, Boekhorst J, Rösch C, Schols HA, Kleerebezem M. Prebiotic utilisation provides Lactiplantibacillus plantarum
a competitive advantage in vitro, but is not reflected by an increased intestinal fitness. Gut Microbes 2024;16:2338946. DOI PubMed
PMC
42. van Bokhorst-van de Veen H, van Swam I, Wels M, Bron PA, Kleerebezem M. Congruent strain specific intestinal persistence of
Lactobacillus plantarum in an intestine-mimicking in vitro system and in human volunteers. PLoS One 2012;7:e44588. DOI PubMed
PMC
43. Fuhren J, Schwalbe M, Boekhorst J, Rösch C, Schols HA, Kleerebezem M. Dietary calcium phosphate strongly impacts gut
microbiome changes elicited by inulin and galacto-oligosaccharides consumption. Microbiome 2021;9:218. DOI PubMed PMC
44. Garrido D, Ruiz-Moyano S, Jimenez-Espinoza R, Eom HJ, Block DE, Mills DA. Utilization of galactooligosaccharides by
Bifidobacterium longum subsp. infantis isolates. Food Microbiol 2013;33:262-70. DOI PubMed PMC
45. Motherway MOC, Kinsella M, Fitzgerald GF, van Sinderen D. Transcriptional and functional characterization of genetic elements
involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003. Microb Biotechnol 2013;6:67-79. DOI PubMed
PMC
46. Rossi M, Corradini C, Amaretti A, et al. Fermentation of fructooligosaccharides and inulin by bifidobacteria: a comparative study of
pure and fecal cultures. Appl Environ Microbiol 2005;71:6150-8. DOI PubMed PMC
47. Viborg AH, Katayama T, Abou Hachem M, et al. Distinct substrate specificities of three glycoside hydrolase family 42
β-galactosidases from Bifidobacterium longum subsp. infantis ATCC 15697. Glycobiology 2014;24:208-16. DOI PubMed
48. Lammens W, Le Roy K, Schroeven L, Van Laere A, Rabijns A, Van den Ende W. Structural insights into glycoside hydrolase family
32 and 68 enzymes: functional implications. J Exp Bot 2009;60:727-40. DOI PubMed
49. Honda H, Nagaoka S, Kawai Y, et al. Purification and characterization of two phospho-β-galactosidases, LacG1 and LacG2, from
Lactobacillus gasseri ATCC33323(T). J Gen Appl Microbiol 2012;58:11-7. DOI PubMed
50. Maathuis AJH, van den Heuvel EG, Schoterman MHC, Venema K. Galacto-oligosaccharides have prebiotic activity in a dynamic in
13
vitro colon model using a C-labeling technique. J Nutr 2012;142:1205-12. DOI PubMed
51. Rattanaprasert M, van Pijkeren JP, Ramer-Tait AE, et al. Genes involved in galactooligosaccharide metabolism in lactobacillus reuteri
and their ecological role in the gastrointestinal tract. Appl Environ Microbiol 2019;85:e01788-19. DOI PubMed PMC
52. Elison E, Vigsnaes LK, Rindom Krogsgaard L, et al. Oral supplementation of healthy adults with 2’-O-fucosyllactose and lacto-N-
neotetraose is well tolerated and shifts the intestinal microbiota. Br J Nutr 2016;116:1356-68. DOI PubMed PMC
53. Van Bokhorst-van de Veen HB PA, Kleerebezem, M. Improving the digestive tract robustness of probiotic lactobaclli. In: Venema K,
do Carmo AP, editors. Probiotics and prebiotics: current research and future trends. Norfolk, UK: Caister Academic Press; 2015. pp.