Page 126 - Read Online
P. 126
Varming et al. Microbiome Res Rep 2024;3:15 https://dx.doi.org/10.20517/mrr.2023.50 Page 15 of 16
Copyright
© The Author(s) 2024.
REFERENCES
1. Turner NA, Sharma-Kuinkel BK, Maskarinec SA, et al. Methicillin-resistant Staphylococcus aureus: an overview of basic and clinical
research. Nat Rev Microbiol 2019;17:203-18. DOI PubMed PMC
2. Lindsay JA, Holden MTG. Understanding the rise of the superbug: investigation of the evolution and genomic variation of
Staphylococcus aureus. Funct Integr Genomics 2006;6:186-201. DOI PubMed
3. McGuinness WA, Malachowa N, DeLeo FR. Vancomycin resistance in Staphylococcus aureus. Yale J Biol Med 2017;90:269-81.
PubMed PMC
4. Brady A, Felipe-Ruiz A, Gallego del Sol F, Marina A, Quiles-Puchalt N, Penadés JR. Molecular basis of lysis-lysogeny decisions in
gram-positive phages. Annu Rev Microbiol 2021;75:563-81. DOI PubMed
5. Haaber J, Leisner JJ, Cohn MT, et al. Bacterial viruses enable their host to acquire antibiotic resistance genes from neighbouring cells.
Nat Commun 2016;7:13333. DOI PubMed PMC
6. Ingmer H, Gerlach D, Wolz C. Temperate phages of Staphylococcus aureus. Microbiol Spectr 2019;7:10-1128. DOI PubMed
7. Goerke C, Pantucek R, Holtfreter S, et al. Diversity of prophages in dominant Staphylococcus aureus clonal lineages. J Bacteriol
2009;191:3462-8. DOI PubMed PMC
8. Rohmer C, Wolz C. The role of hlb-converting bacteriophages in Staphylococcus aureus host adaption. Microb Physiol 2021;31:109-
22. DOI PubMed
9. de Jong NWM, van Kessel KPM, van Strijp JAG. Immune evasion by Staphylococcus aureus. Microbiol Spectr 2019:7. DOI PubMed
10. Sieber RN, Urth TR, Petersen A, et al. Phage-mediated immune evasion and transmission of livestock-associated methicillin-resistant
Staphylococcus aureus in humans. Emerg Infect Dis 2020;26:2578-85. DOI PubMed PMC
11. Verkade E, Kluytmans J. Livestock-associated Staphylococcus aureus CC398: animal reservoirs and human infections. Infect Genet
Evol 2014;21:523-30. DOI PubMed
12. Leinweber H, Sieber RN, Larsen J, Stegger M, Ingmer H. Staphylococcal phages adapt to new hosts by extensive attachment site
variability. mBio 2021;12:e0225921. DOI PubMed PMC
13. Chevallereau A, Pons BJ, van Houte S, Westra ER. Interactions between bacterial and phage communities in natural environments.
Nat Rev Microbiol 2022;20:49-62. DOI PubMed
14. Gordillo Altamirano FL, Barr JJ. Phage therapy in the postantibiotic era. Clin Microbiol Rev 2019;32:e00066-18. DOI PubMed PMC
15. Ptashne M. Principles of a switch. Nat Chem Biol 2011;7:484-7. DOI PubMed
16. Galkin VE, Yu X, Bielnicki J, Ndjonka D, Bell CE, Egelman EH. Cleavage of bacteriophage lambda cI repressor involves the RecA
C-terminal domain. J Mol Biol 2009;385:779-87. DOI PubMed PMC
17. Roberts JW, Roberts CW. Proteolytic cleavage of bacteriophage lambda repressor in induction. Proc Natl Acad Sci U S A
1975;72:147-51. DOI PubMed PMC
18. Pedersen M, Lo Leggio L, Grossmann JG, Larsen S, Hammer K. Identification of quaternary structure and functional domains of the
CI repressor from bacteriophage TP901-1. J Mol Biol 2008;376:983-96. DOI PubMed
19. Frandsen KH, Rasmussen KK, Jensen MR, et al. Binding of the N-terminal domain of the lactococcal bacteriophage TP901-1 CI
repressor to its target DNA: a crystallography, small angle scattering, and nuclear magnetic resonance study. Biochemistry
2013;52:6892-904. DOI
20. Rasmussen KK, Frandsen KEH, Boeri Erba EB, et al. Structural and dynamics studies of a truncated variant of CI repressor from
bacteriophage TP901-1. Sci Rep 2016;6:29574. DOI PubMed PMC
21. Pedersen M, Neergaard JT, Cassias J, et al. Repression of the lysogenic P promoter in bacteriophage TP901-1 through binding of a
R
CI-MOR complex to a composite O -O operator. Sci Rep 2020;10:8659. DOI PubMed PMC
M R
22. Varming AK, Rasmussen KK, Zong Z, Thulstrup PW, Kilstrup M, Lo Leggio L. Flexible linker modulates the binding affinity of the
TP901-1 CI phage repressor to DNA. FEBS J 2022;289:1135-48. DOI PubMed
23. Rasmussen KK, Varming AK, Schmidt SN, et al. Structural basis of the bacteriophage TP901-1 CI repressor dimerization and
interaction with DNA. FEBS Lett 2018;592:1738-50. DOI PubMed
24. Rasmussen KK, Palencia A, Varming AK, et al. Revealing the mechanism of repressor inactivation during switching of a temperate
bacteriophage. Proc Natl Acad Sci U S A 2020;117:20576-85. DOI PubMed PMC
25. Madsen PL, Johansen AH, Hammer K, Brøndsted L. The genetic switch regulating activity of early promoters of the temperate
lactococcal bacteriophage TP901-1. J Bacteriol 1999;181:7430-8. DOI PubMed PMC
26. Das A, Mandal S, Hemmadi V, Ratre V, Biswas M. Studies on the gene regulation involved in the lytic-lysogenic switch in
Staphylococcus aureus temperate bacteriophage Phi11. J Biochem 2020;168:659-68. DOI PubMed
27. Biswas A, Mandal S, Sau S. The N-terminal domain of the repressor of Staphylococcus aureus phage Φ11 possesses an unusual
dimerization ability and DNA binding affinity. PLoS One 2014;9:e95012. DOI PubMed PMC
28. Kristensen CS, Varming AK, Leinweber HAK, et al. Characterization of the genetic switch from phage ɸ13 important for
Staphylococcus aureus colonization in humans. Microbiologyopen 2021;10:e1245. DOI PubMed PMC
29. Tang Y, Nielsen LN, Hvitved A, et al. Commercial biocides induce transfer of prophage Φ13 from human strains of Staphylococcus

