Page 114 - Read Online
P. 114
Procaccianti et al. Microbiome Res Rep 2023;2:24 https://dx.doi.org/10.20517/mrr.2023.23 Page 9 of 12
Consent for publication
Not applicable.
Copyright
© The Author(s) 2023.
REFERENCES
1. Henry T. Recherches sur la flore intestinale des nourrissons:(état normal et pathologique). Available from: https://
books.google.com.hk/books/about/Recherches_sur_la_flore_intestinale_des.html?id=jrdkcgAACAAJ&redir_esc=y. [Last accessed on
5 Jul 2023].
2. Sakanaka M, Gotoh A, Yoshida K, et al. Varied pathways of infant gut-associated bifidobacterium to assimilate human milk
oligosaccharides: prevalence of the gene set and its correlation with bifidobacteria-rich microbiota formation. Nutrients 2019;12:71.
DOI PubMed PMC
3. Alberoni D, Gaggìa F, Baffoni L, Modesto MM, Biavati B, Di Gioia D. Bifidobacterium xylocopae sp. nov. and bifidobacterium
aemilianum sp. nov., from the carpenter bee (xylocopa violacea) digestive tract. Syst Appl Microbiol 2019;42:205-16. DOI PubMed
4. Modesto M, Puglisi E, Bonetti A, et al. Bifidobacterium primatium sp. nov., bifidobacterium scaligerum sp. nov., bifidobacterium
felsineum sp. nov. and bifidobacterium simiarum sp. nov.: four novel taxa isolated from the faeces of the cotton top tamarin (saguinus
oedipus) and the emperor tamarin (saguinus imperator). Syst Appl Microbiol 2018;41:593-603. DOI
5. Macpherson AJ, de Agüero MG, Ganal-Vonarburg SC. How nutrition and the maternal microbiota shape the neonatal immune system.
Nat Rev Immunol 2017;17:508-17. DOI PubMed
6. Stewart CJ, Ajami NJ, O'Brien JL, et al. Temporal development of the gut microbiome in early childhood from the TEDDY study.
Nature 2018;562:583-8. DOI PubMed PMC
7. Odamaki T, Kato K, Sugahara H, et al. Age-related changes in gut microbiota composition from newborn to centenarian: a cross-
sectional study. BMC Microbiol 2016;16:90. DOI PubMed PMC
8. Hopkins MJ, Macfarlane GT. Changes in predominant bacterial populations in human faeces with age and with clostridium difficile
infection. J Med Microbiol 2002;51:448-54. DOI PubMed
9. Woodmansey EJ, McMurdo ME, Macfarlane GT, Macfarlane S. Comparison of compositions and metabolic activities of fecal
microbiotas in young adults and in antibiotic-treated and non-antibiotic-treated elderly subjects. Appl Environ Microbiol
2004;70:6113-22. DOI PubMed PMC
10. Biagi E, Franceschi C, Rampelli S, et al. Gut microbiota and extreme longevity. Curr Biol 2016;26:1480-5. DOI
11. Biagi E, Rampelli S, Turroni S, Quercia S, Candela M, Brigidi P. The gut microbiota of centenarians: signatures of longevity in the gut
microbiota profile. Mech Ageing Dev 2017;165:180-4. DOI PubMed
12. Rampelli S, Soverini M, D'Amico F, et al. Shotgun metagenomics of gut microbiota in humans with up to extreme longevity and the
increasing role of xenobiotic degradation. mSystems 2020:5. DOI PubMed PMC
13. Rivière A, Selak M, Lantin D, Leroy F, De Vuyst L. Bifidobacteria and butyrate-producing colon bacteria: importance and strategies
for their stimulation in the human gut. Front Microbiol 2016;7:979. DOI PubMed PMC
14. Koh A, De Vadder F, Kovatcheva-Datchary P, Bäckhed F. From dietary fiber to host physiology: short-chain fatty acids as key
bacterial metabolites. Cell 2016;165:1332-45. DOI PubMed
15. Milani C, Lugli GA, Duranti S, et al. Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut. Sci Rep
2015;5:15782. DOI PubMed PMC
16. Wong CB, Odamaki T, Xiao JZ. Insights into the reason of human-residential bifidobacteria (HRB) being the natural inhabitants of the
human gut and their potential health-promoting benefits. FEMS Microbiol Rev 2020;44:369-85. DOI PubMed PMC
17. Sugahara H, Odamaki T, Hashikura N, Abe F, Xiao JZ. Differences in folate production by bifidobacteria of different origins. Biosci
Microbiota Food Health 2015;34:87-93. DOI PubMed PMC
18. D’Aimmo MR, Mattarelli P, Biavati B, Carlsson NG, Andlid T. The potential of bifidobacteria as a source of natural folate. J Appl
Microbiol 2012;112:975-84. DOI PubMed
19. Jacob RA. Folate, DNA methylation, and gene expression: factors of nature and nurture. Am J Clin Nutr 2000;72:903-4. DOI
PubMed
20. Meng D, Sommella E, Salviati E, et al. Indole-3-lactic acid, a metabolite of tryptophan, secreted by bifidobacterium longum subspecies
infantis is anti-inflammatory in the immature intestine. Pediatr Res 2020;88:209-17. DOI PubMed PMC
21. Hubbard TD, Murray IA, Bisson WH, et al. Adaptation of the human aryl hydrocarbon receptor to sense microbiota-derived indoles.
Sci Rep 2015;5:12689. DOI PubMed PMC
22. Lanz TV, Becker S, Mohapatra SR, Opitz CA, Wick W, Platten M. Suppression of Th1 differentiation by tryptophan supplementation
in vivo. Amino Acids 2017;49:1169-75. DOI PubMed
23. Lim HJ, Shin HS. Antimicrobial and immunomodulatory effects of bifidobacterium strains: a review. J Microbiol Biotechnol
2020;30:1793-800. DOI PubMed PMC
24. Kovanda L, Zhang W, Wei X, et al. In vitro antimicrobial activities of organic acids and their derivatives on several species of gram-

