Page 265 - Read Online
P. 265

Parsons et al. J Cancer Metastasis Treat 2018;4:19  I  http://dx.doi.org/10.20517/2394-4722.2018.11                        Page 19 of 23

               93.  Wang J, Liu X, Wu H, Ni P, Gu Z, Qiao Y, Chen N, Sun F, Fan Q. CREB up-regulates long non-coding RNA, HULC expression through
                   interaction with microRNA-372 in liver cancer. Nucleic Acids Res 2010;38:5366-83.
               94.  Voorhoeve PM, le Sage C, Schrier M, Gillis AJ, Stoop H, Nagel R, Liu YP, van Duijse J, Drost J, Griekspoor A, Zlotorynski E, Yabuta
                   N, De Vita G, Nojima H, Looijenga LH, Agami R. A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular
                   germ cell tumors. Adv Exp Med Biol 2007;604:17-46.
               95.  Ala U, Karreth FA, Bosia C, Pagnani A, Taulli R, Léopold V, Tay Y, Provero P, Zecchina R, Pandolfi PP. Integrated transcriptional
                   and competitive endogenous RNA networks are cross-regulated in permissive molecular environments. Proc Natl Acad Sci U S A
                   2013;110:7154-9.
               96.  Liu Y, Lansbury P. The UCH-L1 gene encodes two opposing enzymatic activities that affect a-synuclein degradation and Parkinson’s
                   disease susceptibility. Cell 2002;111:209-18.
               97.  Carrieri C, Cimatti L, Biagioli M, Beugnet A, Zucchelli S, Fedele S, Pesce E, Ferrer I, Collavin L, Santoro C, Forrest AR, Carninci P,
                   Biffo S, Stupka E, Gustincich S. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.
                   Nature 2012;491:454-7.
               98.  Wang P, Xue Y, Han Y, Lin L, Wu C, Xu S, Jiang Z, Xu J, Liu Q, Cao X. The STAT3-binding long noncoding RNA lnc-DC controls
                   human dendritic cell differentiation. Science 2014;344:310-3.
               99.  Xu K, Nagy PD. RNA virus replication depends on enrichment of phosphatidylethanolamine at replication sites in subcellular
                   membranes. Proc Natl Acad Sci U S A 2015;112:E1782-91.
               100. Lee WM, Ahlquist P. Membrane synthesis, specific lipid requirements, and localized lipid composition changes associated with a
                   positive-strand RNA virus RNA replication protein. J Virol 2003;77:12819-28.
               101. Michanek A, Kristen N, Höök F, Nylander T, Sparr E. RNA and DNA interactions with zwitterionic and charged lipid membranes - a
                   DSC and QCM-D study. Biochim Biophys Acta 2010;1798:829-38.
               102. Chukkapalli V, Inlora J, Todd GC, Ono A. Evidence in support of RNA-mediated inhibition of phosphatidylserine-dependent HIV-1 Gag
                   membrane binding in cells. J Virol 2013;87:7155-9.
               103. Mishra RK, Eliceiri GL. Three small nucleolar RNAs that are involved in ribosomal RNA precursor processing. Proc Natl Acad Sci U S A
                   1997;94:4972-7.
               104. Bratkovič T, Rogelj B. The many faces of small nucleolar RNAs. Biochim Biophys Acta 2014;1839:438-43.
               105. Eliceiri GL. Small nucleolar RNAs. Cell Mol Life Sci 1999;56:22-31.
               106. Shah BN, Liu X, Correll CC. Imp3 unfolds stem structures in pre-rRNA and U3 snoRNA to form a duplex essential for small subunit
                   processing. RNA 2013;19:1372-83.
               107. Michot B, Joseph N, Mazan S, Bachellerie JP. Evolutionarily conserved structural features in the ITS2 of mammalian pre-rRNAs and
                   potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences. Nucleic Acids Res 1999;27:2271-82.
               108. Pacilli A, Ceccarelli C, Treré D, Montanaro L. SnoRNA U50 levels are regulated by cell proliferation and rRNA transcription. Int J Mol
                   Sci 2013;14:14923-35.
               109. Taylor BS, Schultz N, Hieronymus H, Gopalan A, Xiao Y, Carver BS, Arora VK, Kaushik P, Cerami E, Reva B, Antipin Y, Mitsiades N,
                   Landers T, Dolgalev I, Major JE, Wilson M, Socci ND, Lash AE, Heguy A, Eastham JA, Scher HI, Reuter VE, Scardino PT, Sander C,
                   Sawyers CL, Gerald WL. Integrative genomic profiling of human prostate cancer. Cancer Cell 2010;18:11-22.
               110.  Crea F, Venalainen E, Ci X, Cheng H, Pikor L, Parolia A, Xue H, Nur Saidy NR, Lin D, Lam W, Collins C, Wang Y. The role of
                   epigenetics and long noncoding RNA MIAT in neuroendocrine prostate cancer. Epigenomics 2016;8:721-31.
               111.  Jing X, Liang H, Cui X, Han C, Hao C, Huo K. Long noncoding RNA CCAT2 can predict metastasis and a poor prognosis: a meta-
                   analysis. Clin Chim Acta 2017;468:159-65.
               112.  Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK,
                   Khatun J, Williams BA, Zaleski C, Rozowsky J, Röder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Bar
                   NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R,
                   Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C,
                   Jha S, Johnson R, Kapranov P, King B, Kingswood C, Luo OJ, Park E, Persaud K, Preall JB, Ribeca P, Risk B, Robyr D, Sammeth M,
                   Schaffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H, Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X,
                   Hayashizaki Y, Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis SE, Hannon G, Giddings MC, Ruan Y, Wold B, Carninci P,
                   Guigó R, Gingeras TR. Landscape of transcription in human cells. Nature 2012;489:101-8.
               113.  Park SH, Cheung LW, Wong AS, Leung PC. Estrogen regulates Snail and Slug in the down-regulation of E-cadherin and induces
                   metastatic potential of ovarian cancer cells through estrogen receptor alpha. Mol Endocrinol 2008;22:2085-98.
               114.  He R, Zhang FH, Shen N. LncRNA FEZF1-AS1 enhances epithelial-mesenchymal transition (EMT) through suppressing E-cadherin
                   and regulating WNT pathway in non-small cell lung cancer (NSCLC). Biomed Pharmacother 2017;95:331-8.
               115.  Yue B, Qiu S, Zhao S, Liu C, Zhang D, Yu F, Peng Z, Yan D. LncRNA-ATB mediated E-cadherin repression promotes the progression
                   of colon cancer and predicts poor prognosis. J Gastroenterol Hepatol 2016;31:595-603.
               116.  ENCODE Project Consortium. The ENCODE (ENCyclopedia of DNA Elements) Project. Science 2004;306:636-40.
               117.  de Souza N. Genomics: The ENCODE project. Nat Methods 2012;9:1046.
               118.  Pennisi E. ENCODE project writes eulogy for junk DNA. Science 2012;337:1159-61.
               119.  Doolittle WF. Is junk DNA bunk? A critique of ENCODE. Proc Natl Acad Sci U S A 2013;110:5294-300.
               120. Thorvaldsen JL, Duran KL, Bartolomei MS. Deletion of the H19 differentially methylated domain results in loss of imprinted
                   expression of H19 and Igf2. Genes Dev 1998;12:3693-702.
   260   261   262   263   264   265   266   267   268   269   270